School of Chemistry journal papers published during 2012 (to date)

F. Aldabbagh, Heterocyclic chemistry, Annu. Rep. Prog. Chem., Sect. B: Org. Chem. 2012, 108, 110-130. (Invited Review). DOI Link.

J. M. O’Connell, E. Moriarty, F. Aldabbagh, Access to aromatic ring-fused benzimidazoles using photochemical substitutions of the benzimidazol-2-yl radical, Synthesis, 2012, 44, 3371-3377. DOI Link. 

E. Joyce, P. Kavanagh, D. Leech, J. Karpinska, P. McArdle, F. Aldabbagh. Acetic anhydride mediated condensation of aromatic o-diacid dichlorides with benzimidazoles to provide electro-reducible p-dione adducts, Tetrahedron Lett. 2012, 53, 3788-3791. DOI Link.  

P. O’Connor, R. Yang, W. M. Carroll, Y. Rochev, F. Aldabbagh. Facile synthesis of thermoresponsive block copolymers of N-isopropylacrylamide using heterogeneous controlled/living nitroxide-mediated polymerizations in supercritical carbon dioxide Eur. Polym. J. 2012. 48, 1279-1288. DOI Link.

V. Fagan, S. Bonham, M. P. Carty, P. Saenz-Méndez, L. A. Eriksson, F. Aldabbagh. COMPARE analysis of the toxicity of an iminoquinone derivative of the imidazo[5,4-f]benzimidazoles with NAD(P)H:quinone Oxidoreductase 1 (NQO1) activity and computational docking of quinones as NQO1 substrates. Bioorg. Med. Chem. 2012, 3223-3232.  DOI Link

R. Yang, T. Vo T. N., A. V. Gorelov, F. Aldabbagh, W. M. Carroll, M. G. Meere, Y. Rochev. A mathematical model for pulsatile release: Controlled release of rhodamine B from UV-crosslinked thermoresponsive thin films, International Journal of Pharmaceutics, 2012, 427, 320-327. DOI Link

V. Fagan, S. Bonham, P. McArdle, M. P. Carty and F. Aldabbagh. Synthesis and Toxicity of New Ring-Fused Imidazo[5,4-f]benzimidazolequinones and Mechanism Using Amine N-Oxide Cyclizations. Eur. J. Org. Chem. 2012, 1967-1975.  DOI Link

M. Nash, W. M. Carroll, P. J. Foley, G. Maguire, C. O’Connell, A. V. Gorelov, S. Beloshapkin and Y. A. Rochev. Ultra-thin spin coated crosslinkable hydrogels for use in cell sheet recovery—synthesis, characterisation to application. Soft Matter., 2012, 8, 3889-3899. DOI Link. 

Maria E. Nash, Deirdre Healy, William M. Carroll,  Carlos Elvira and Yury A. Rochev. Cell and cell sheet recovery from pNIPAm coatings; motivation and history to present day approaches J. Mater. Chem., 2012, DOI Link.  

Maria E. Nash, William M. Carroll,  Diego Velasco, Javier Gomez,  Alexander V. Gorelov,  Dmitry Elezov,  Alberto Gallardo,  Yury A. Rochev,  Carlos Elvira, Synthesis and Characterization of a Novel Thermoresponsive Copolymer Series and their Application in Cell and Cell Sheet Regeneration. Journal of Biomaterials Science: Polymer Edition (In Press), 2012. DOI Link. 

Myriam G. Tardajos, Maria E. Nash, Yury A. Rochev, Helmut Reinecke, Carlos Elvira, Alberto Gallardo, Homologous Copolymerization Route to Functional and Biocompatible Poly-vinylpyrrolidone. Macromolecular Chemistry & Physics, 2012, 213(5), 529-538.  

Babu R Prasad, Gillian Mullins, Natalia Nikolskaya, David Connolly, Terry J. Smith, Valerie A. Gerard, Stephen J. Byrne, Gemma-Louise Davies, Yurii K. Gun'ko and Yury Rochev,  Effects of Long-term exposure of Gelatinated and Non-gelatinated Cadmium Telluride Quantum Dots on Differentiated PC12 cells. J. Nanobiotechnology. 2012 Jan 20;10:4.

McMahon S. S, Nikolskaya N, Ní Choileáin S, Hennessy N, O'Brien T, Strappe P, Gorelov A, Rochev Y. Thermosensitive Hydrogel for Prolonged Delivery of Lentiviral Vector Expressing Neurotrophin-3 in vitro. J Gene Med. 2011 Nov;13(11):591-601.

N. Berg, T. N. Hooper, J. Liu, C. C. Beedle, S. K. Singh, G. Rajaraman, S. Piligkos, S. Hill, E. K. Brechin and L. F. Jones. Synthetic, structural, spectroscopic and theoretical study of a Mn(III)-Cu(II) dimer containing a Jahn-Teller compressed Mn ion. Dalton Trans, 2013, 42(1), 207-216.

E. Houton, S. M. Taylor, C. C. Beedle, J. Cano, S. Piligkos, S. Hill, A. G. Ryder, E. K. Brechin and L. F. Jones. Ferromagnetic exchange in a twisted, oxime-bridged [Mn(III)₂] dimer. Dalton Trans., 2012,  41(27), 8340-8347. DOI Link.    

S. T. Meally, C. McDonald, P. Kealy, S. M. Taylor, E. K. Brechin and L. F. Jones. Investigating the Solid State Hosting Qualities of Homo- and Heterovalent [Co^₇] Metallocalix[6]arenes. Dalton Trans., 2012, 41(18), 5610-5616. DOI Link.   

N. Berg, S. M. Taylor, A. Prescimone, E. K. Brechin, L. F. Jones. Old Dog, New Tricks: 2,2'-biphenol as a bridging and book-end ligand in discrete and extended Co(II) architectures. CrystEngComm. 2012, 14(8), 2732-2738.  DOI Link.  

N. Berg, T. Rajeshkumar, S. M. Taylor, E. K. Brechin, G. Rajaraman, L. F. Jones. What controls the magnetic interaction in bis-mu-alkoxo Mn(III) dimers? A combined experimental and theoretical exploration. Chem. Eur. J. 2012, 18, 5906-5918.  DOI Link.

K. Hasan, S.A. Patil, D. Leech, C. Hägerhäll, L. Gorton. Electrochemical communication between microbial cells and electrodes via osmium redox systems, Biochem. Soc. Trans. 2012, 40, 1330–1335. DOI link

A. Kumar, K. Katuri, P. Lens, D. Leech. Does bioelectrochemical cell configuration and anode potential affect biofilm response? Biochem. Soc. Trans. 2012, 40, 1308–1314. DOI link

D. Leech, P. Kavanagh, W. Schuhmann. Enzymatic fuel cells: Recent progress, Electrochim. Acta 2012, 84, 223–234. DOI Link

D. MacAodha, M.L. Ferrer, P. Ó Conghaile, P. Kavanagh, D. Leech. Crosslinked redox polymer enzyme electrodes containing carbon nanotubes for high and stable glucose oxidation current, Phys. Chem. Chem. Phys. 2012, 14, 14667–14672. DOI Link

M.E. Yakovleva, A. Killyéni, R. Ortiz, C. Schulz , D. MacAodha, P. Ó Conghaile, D. Leech, I. C. Popescu, C. Gonaus, C.K. Peterbauer, L. Gorton. Recombinant pyranose dehydrogenase—A versatile enzyme possessing both mediated and direct electron transfer, Electrochem. Comm. 2012, 24, 120–122. DOI link

P. Jenkins, S. Tuurala, A. Vaari, M. Valkiainen, M. Smolander, D. Leech. A comparison of glucose oxidase and aldose dehydrogenase as mediated anodes in printed glucose/oxygen enzymatic fuel cells using ABTS/laccase cathodes, Bioelectrochemistry 2012, 87, 172–177. DOI link

S. A. Patil, K. Hasan, D. Leech, C. Hägerhäll, L. Gorton. Improved microbial electrocatalysis with osmium polymer modified electrodes, Chem. Commun., 2012, 48, 10183–10185. DOI Link.

K.P. Katuri, A. Enright, V. O'Flaherty, D. Leech. Microbial analysis of anodic biofilm in a microbial fuel cell using slaughterhouse wastewater, Bioelectrochemistry 2012, 87, 164–171. DOI Link

K.P. Katuri, S. Rengaraj, P. Kavanagh, V. O'Flaherty, D. Leech. Charge transport through Geobacter sulfurreducens biofilms grown on graphite rods, Langmuir 2012, 28, 7904−7913. DOI Link

M.N. Zafar, N. Beden, D. Leech, C.H Sygmund, R. Ludwig, L. Gorton. Characterization of different FAD-dependent glucose dehydrogenases for possible use in glucose based biosensors and biofuel cells. Analytical & Bioanalytical Chemistry, 2012, 402, 2069–2077. DOI Link

P. Jenkins, S. Tuurala, A. Vaari, M. Valkiainen, M. Smolander, D. Leech. A mediated glucose/oxygen enzymatic fuel cell based on printed carbon inks containing aldose dehydrogenase and laccase as anode and cathode. Enzyme & Microbial Technology, 2012, 50, 181–187. DOI Link

M.N. Zafar, X. Wang, C.H Sygmund, R. Ludwig, D. Leech, L. Gorton. Electron transfer studies with a new FAD-dependent glucose dehydrogenase and osmium polymers of different redox potentials. Analytical Chemistry, 2012, 84, 334–341. DOI Link

M.D. Scanlon, U. Salaj-Kosla, S. Belochapkine, D. MacAodha, D. Leech, Y. Ding, E. Magner. Characterization of nanoporous gold electrodes for bioelectrochemical applications. Langmuir, 2012, 28, 2251–2261. DOI Link

S. Boland, D. Leech. A glucose/oxygen enzymatic fuel cell based on redox polymer and enzyme immobilisation at highly-ordered macroporous gold electrodes. Analyst, 2012, 137, 113–117. DOI Link

P. A. McDowell, D. A. Foley, P. O’Leary, A. Ford and A. R. Maguire. Asymmetric Synthesis of cis-7-Methoxycalamenene via the Intramolecular Buchner Reaction of an alpha-Diazolketone. J. Org. Chem., 2012, 77, 2035-2040.  DOI Link 

Rapid Quantification of Tryptophan and Tyrosine in Chemically Defined Cell Culture Media using Fluorescence Spectroscopy. A. Calvet, B. Li, and A. G. Ryder.  Journal of Pharmaceutical and Biomedical Analysis. 2012, DOI Link   

John M. Simmie. Kinetics and Thermochemistry of 2,5-Dimethyltetrahydrofuran and Related Oxolanes: Next Next-Generation Biofuels J. Phys. Chem. A (2012) in press.  DOI Link.  

F. Gillespie, W. K. Metcalfe, P. Dirrenberger, O. Herbinet, P-A. Glaude, F. Battin-Leclerc, H. J. Curran. Measurements of Flat-Flame Velocities of Diethyl Ether in Air. Energy, 2012, in press. DOI Link.  
 
D. Darcy, C. J. Tobin, K. Yasunaga, J. M. Simmie, J. Würmel, W. K. Metcalfe, T. Niass, S. S. Ahmed, C.K. Westbrook, H. J. Curran. A High Pressure Shock Tube Study of n-Propylbenzene Oxidation and its Comparison with n-Butylbenzene. Combustion and Flame, 2012, 159 2219–2232. DOI Link.  
 
T. Turányi, T. Nagy, I. Gy. Zsély, M. Cserháti, T. Varga, B. Szabó, I. Sedyó, P. T. Kiss, A. Zempléni, H. J. Curran. Determination of Rate Parameters Based on both Direct and Indirect Measurements Int. J. Chem. Kinet., 2012, 44 284–302. DOI Link.  
 
K. Yasunaga, T. Mikajiri, S.M. Sarathy, T. Koike, F. Gillespie, T. Nagy, J. M. Simmie, H. J. Curran. A Shock Tube and Chemical Kinetic Modeling Study of the Pyrolysis and Oxidation of Butanols. Combustion and Flame, 2012, 159(6), 2009–2027. DOI Link.  

S.M. Sarathy, S. Vranckx, K. Yasunaga, M. Mehl, P. Oßwald, W. K. Metcalfe, C. K. Westbrook, W. J. Pitz, K. Kohse-Höinghaus, R. X. Fernandes, H. J. Curran. A Comprehensive Chemical Kinetic Combustion Model for the Four Butanol Isomers. Combustion and Flame, 2012, 159(6), 2028–2055. DOI Link.  

R. Monaghan, R. Tahir, A. Cuoci, G. Bourque, M. Füri, R. Gordon, T. Faravelli, A. Frassoldati, H. J. Curran. A Detailed Multi-Dimensional Study of Pollutant Formation in a Methane Diffusion Flame. Energy and Fuels, 2012, 26, 1598–1611. DOI Link. 

B. Husson, R. Bounaceur, K. Tanaka, M. Ferrari, O. Herbinet, P-A. Glaude, R. Fournet, F. Battin-Leclerc, M. Crochet, G. Vanhove, R. Minetti, C.J. Tobin, K. Yasunaga, J. M. Simmie, H. J. Curran, T. Niass, O. Mathieu, S. S. Ahmed. Experimental and Modeling Study of the Oxidation of n-Butylbenzene. Combustion and Flame, 2012, 159(4), 1399–1416. DOI Link. 

C-W. Zhou, J. M. Simmie, H. J. Curran. Rate Constants for Hydrogen Abstraction by HO^₂ from n-Butanol. Int. J. Chem. Kinet., 2012, 44, 155–164. DOI Link.

Y. Dürüst, H. Karakus, M. Kaiser, D. Tasdemir. Synthesis and anti-protozoal activity of novel dihydropyrrolo[3,4-d][1,2,3]triazoles. Eur. J. Med. Chem., 2012, 48, 296-304. DOI Link 

B. Orlikova, M. Schnekenburger, M. Zloh, F. Golais, M. Diederich, D. Tasdemir. Chalcones as dual inhibitors of HDAC and NF-κB. Oncol. Rep., 2012, 28, 797-805. DOI Link

G. Chianese, E. Fattorusso, F. Scala, R. Teta, B. Calcinai, G. Bavestrello, H.A. Dien, M. Kaiser, D. Tasdemir, O. Taglialatela-Scafati. Manadoperoxides, a new class of potent antitrypanosomal agents of marine origin. Org. Biomol. Chem, 2012, 10, 7197-7207. DOI Link.

S. Jensen, S. Omarsdottir, A. Gono Bwalya, M.A. Nielsen, D. Tasdemir, E.S. Olafsdottir. Marchantin A, a macrocyclic bisbibenzyl ether isolated from the liverwort Marchantia polymorhpa, inhibits protozoal growth in vitro. Phytomedicine 2012, 19, 1191-1195.  DOI Link.  
 
N.M. Carballeira, M. Cartagena, D. Sanabria, D. Tasdemir, C.F. Prada, R.M. Reguera, R. Balaña-Fouce. 2-Alkynoic fatty acids inhibit topoisomerase IB from Leishmania donovani. Bioorg. Med. Chem. Lett. 2012, 22, 6185-6189. DOI Link.  

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