Books

A.M. Osborn; C.J. Smith (2005) Molecular Microbial Ecology. Oxford: Taylor and Francis Group. [Details]

Book Chapters

Smith, C.J (2005) 'Quantitative Real Time PCR' In: Molecular Microbial Ecology. Oxford: Taylor and Francis. [Details]

McKew, BA; CJ. Smith (2010) 'Real-time PCR approaches for analysis of hydrocarbon-degrading bacterial communities' In: K.N. Timmis (eds). Hydrocarbons, Oils, Lipids, and Derived Compounds. Heidelberg: Springer. [Details]

 

Peer Reviewed Journals

Smith, C.J; Danilowicz, B.S; Clear, A.K; Costello, F; Wilson, B;Meijer. W.G. (2005) 'T-Align, a web based tool for comparison of multiple Terminal Restriction Fragment Length Polymorphism Profiles'. Fems Microbiology Ecology, 54 :375-380. [Details]

Smith, C.J; Nedwell, D.B; Dong, L.F; Osborn, A.M. (2006) 'Evaluation of Quantitative Polymerase Chain Reaction (Q-PCR) based approaches for determining gene copy and gene transcript numbers in environmental samples'. Environmental Microbiology, 8 (5):804-815. [Details]

McKew, B.A; Coulon, F; Yakimov, M.M; Denaro, R; Genovese, M; Smith, C.J; Osborn, A.M; Timmis, K.N; McGenity, T.J. (2007) 'Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria'. Environmental Microbiology, 9 (6):1562-1571. [Details]

Haynes, K; Hofmann, T.A; Smith, C.J; Ball, A.S; Underwood, G.J.C; Osborn, A.M. (2007) 'Diatom-derived carbohydrates as drivers of bacterial community composition in estuarine sediments'. Applied And Environmental Microbiology, 73 (19):6112-6124. [Details]

Smith, C.J; Danilowicz, B.S ;Meijer. W.G. (2007) 'Characterisation of the bacterial community associated with the surface and mucus layer of whiting (Merlangius merlangus)'. Fems Microbiology Ecology, 62 :90-97. [Details]

Smith, C.J; Nedwell, D.B; Dong, L.F; Osborn, A.M (2007) 'Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments'. Applied And Environmental Microbiology, 73 (11):3612-3622. [Details]

Smith, CJ; Danilowicz, BS; Meijer, WG. (2009) 'Bacteria as biological tags for marine fish'. Canadian Journal Of Fisheries And Aquatic Sciences, 66 (5):713-716. [Details]

Dong, LF; Smith, CJ; Papaspyrou, S; Stott, A; Osborn, AM; Nedwell, DB. (2009) 'Profiles of benthic denitrification, anammox and nitrate ammonification; and key functional genes along an estuarine nutrient gradient; the Colne estuary, UK'. Applied And Environmental Microbiology, 75 (10):3171-3179. [Details]

Smith, CJ and Osborn AM (2009) 'Advantages and limitations of quantitative PCR (Q-PCR) based approaches in microbial ecology'. Fems Microbiology Ecology, 67 :6-20. [Details]

Laverock, B., Smith, C. J., Tait, K., Osborn, A. M., Widdicombe, S., Gilbert, J. A. (2010) 'Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments'. The ISME Journal, 4 :1531-1544. [Details]

Dong, LF; Naqasima-Sobey, M; Smith, CJ; Rusmana, I; Phillips, W; Stott, A; Osborn, AM and Nedwell, DB. (2011) 'Dissimilatory reduction of nitrate to ammonium (DNRA) not denitrification dominates benthic nitrate reduction in tropical estuaries'. Limnology And Oceanography, 56 (1):297-291. [Details]