Dr. AARON GOLDEN

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Contact Details

Lecturer Above The Bar
School of Mathematics, Statistic
& Applied Mathematics
Aras de Brun ADB 1005
NUI Galway

T: Ext. 2327
E: aaron.golden@nuigalway.ie
 
researcher

Biography

Aaron Golden graduated with a B.A. in Natural Sciences (Experimental Physics) from Trinity College Dublin in 1991, a M.Sc. in Computational Science from the Department of Applied Mathematics & Theoretical Physics at Queens University Belfast in 1992, and completed a PhD in Astronomy at the School of Physics, National University of Ireland, Galway in 1999 - during his doctoral studies he was a Visiting Scholar to the Department of Astronomy at UC Berkeley in 1998. Dr. Golden was appointed a lecturer in IT at NUI Galway in 1999, moving to the School of Mathematics, Statistics and Applied Mathematics in 2008. In 2004 Dr. Golden was a Visiting Astronomer at the Paris Observatory, and a Human Frontier Science Fellow to the Albert Einstein College of Medicine in New York City - in 2007 he was awarded a Short Term Fellowship by the European Molecular Biology Laboratory to visit the Institute for Molecular Biology in Heraklion, Greece. On leave between 2011 and 2015, Dr. Golden was an Associate Professor of Genetics at the Albert Einstein College of Medicine, as well as a Research Associate Professor of Mathematical Sciences at Yeshiva University and a Research Associate at the Department of Astrophysics at the American Museum of Natural History and was also a consultant to NASA's Planetary Sciences Division. In 2016 he returned to resume his faculty duties in NUI Galway, and in 2017 was appointed Research Associate/Visiting Astronomer to the Armagh Observatory and Planetarium.

In 2001 the International Astronomical Union approved the naming of minor planet 11451 as "Aarongolden" in recognition of his contributions to professional astronomy.

Personal website




Research Interests

Dr. Golden's current research interests in genomics involve the identification of predictive biomarkers in high-throughput datasets, with a particular focus on radiobiology. Dr. Golden is also exploring the use of complex earth observation data products to predict ground truth conditions using remote sensing data. Both areas have in common the development and application of data science methodologies within domain areas in which he has prior experience.





Research Projects

  Project Start Date End Date
GENERAL RESEARCH ACCOUNT AARON GOLDEN 01-FEB-17 31-JAN-27
SFI 07 RFP PHYF553 STTF09 AARON GOLDEN 01-NOV-09 31-DEC-10
IRCSET EMBARK 05 NIGEL MCCOY A GOLDEN 01-OCT-05 30-SEP-08
IRCSET EMBARK PAUL GEELEHER A Golden 01-SEP-08 31-AUG-13
STRATEGIC RESEARCH FUND AARON GOLDEN 01-FEB-10 27-NOV-10
SFI 05 RFP CMS0001 AARON GOLDEN 31-JUL-05 31-JAN-09
INVESTIGATING PULSED COHERENT RADIO EMISSION 01-JUN-07 31-MAY-10
989 MF 38 00 A GOLDEN ITC 01-MAY-00 29-NOV-04
989 MF 24 1 M DIPOLE APPROXIMATION 01-JUL-01 29-NOV-04

Peer Reviewed Journals

  Year Publication
(2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'
Pollack, RM,Barzilai, N,Anghel, V,Kulkarni, AS,Golden, A,O'Broin, P,Sinclair, DA,Bonkowski, MS,Coleville, AJ,Powell, D,Kim, S,Moaddel, R,Stein, D,Zhang, KH,Hawkins, M,Crandall, JP (2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'. Journals Of Gerontology Series A-Biological Sciences And Medical Sciences, 72 :1703-1709 [DOI] [Details]
(2017) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'
Barnicle, A,Seoighe, C,Greally, JM,Golden, A,Egan, LJ (2017) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'. Epigenetics, 12 :591-606 [DOI] [Details]
(2017) 'Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements'
Demaerel, W. and Hestand, M. S. and Vergaelen, E. and Swillen, A. and Lopez-Sanchez, M. and Perez-Jurado, L. A. and McDonald-McGinn, D. M. and Zackai, E. and Emanuel, B. S. and Morrow, B. E. and Breckpot, J. and Devriendt, K. and Vermeesch, J. R. and Antshel, K. and Arango, C. and Armando, M. and Bassett, A. and Bearden, C. and Boot, E. and Bravo-Sanchez, M. and Breetvelt, E. and Busa, T. and Butcher, N. and Campbell, L. and Carmel, M. and Chow, E. and Crowley, T. B. and Cubells, J. and Cutler, D. and Demaerel, W. and Digilio, M. C. and Duijff, S. and Eliez, S. and Emanuel, B. and Epstein, M. and Evers, R. and Fernandez Garcia-Moya, L. and Fiksinski, A. and Fraguas, D. and Fremont, W. and Fritsch, R. and Garcia-Minaur, S. and Golden, A. and Gothelf, D. and Guo, T. and Gur, R. and Gur, R. a (2017) 'Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements'. Am. J. Hum. Genet, 101 (4):616-622 [Details]
(2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'
Pollack, R. M. and Barzilai, N. and Anghel, V. and Kulkarni, A. S. and Golden, A. and O'Broin, P. and Sinclair, D. A. and Bonkowski, M. S. and Coleville, A. J. and Powell, D. and Kim, S. and Moaddel, R. and Stein, D. and Zhang, K. and Hawkins, M. and Crandall, J. P. (2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'. J. Gerontol. A Biol. Sci. Med. Sci, 72 (12):1703-1709 [Details]
(2016) 'LPA receptor activity is basal specific and coincident with early pregnancy and involution during mammary gland postnatal development'
Acosta, Deanna and Bagchi, Susmita and Broin, Pilib \'O and Hollern, Daniel and Racedo, Silvia E and Morrow, Bernice and Sellers, Rani S and Greally, John M and Golden, Aaron and Andrechek, Eran and others (2016) 'LPA receptor activity is basal specific and coincident with early pregnancy and involution during mammary gland postnatal development'. Scientific reports, 6 [Details]
(2016) 'Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells'
Barnicle, A,Seoighe, C,Golden, A,Greally, JM,Egan, LJ (2016) 'Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells'. Physiological Genomics, 48 :257-273 [DOI] [Details]
(2016) 'Structure and function of neonatal social communication in a genetic mouse model of autism spectrum disorders'
Tomohisa Takahashi, Shota Okabe, Pilib Ó Broin, Akira Nishi, Kenny Ye, Michael Beckert, Takeshi Izumi, Hiroaki Machida, Gina Kang, Jose L. Pena, Aaron Golden, Takefumi Kikusui, Noboru Hiroi (2016) 'Structure and function of neonatal social communication in a genetic mouse model of autism spectrum disorders'. Molecular Psychiatry, [Details]
(2015) 'Intestinal Microbiota-Derived Metabolomic Blood Plasma Markers for Prior Radiation Injury'
Ó Broin, Pilib and Vaitheesvaran, Bhavapriya and Saha, Subhrajit and Hartil, Kirsten and Chen, Emily I and Goldman, Devorah and Fleming, William Harv and Kurland, Irwin J and Guha, Chandan and Golden, Aaron (2015) 'Intestinal Microbiota-Derived Metabolomic Blood Plasma Markers for Prior Radiation Injury'. International Journal Of Radiation Oncology Biology Physics, 91 (2):360-367 [Details]
(2015) 'Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach'
Ó Broin, Pilib and Smith, Terry J and Golden, Aaron AJ (2015) 'Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach'. BMC Bioinformatics, 16 (1) [Details]
(2015) 'Deregulation of the Ras-Erk signaling axis modulates the enhancer landscape'
Nabet, Behnam and Broin, Pilib O and Reyes, Jaime M and Shieh, Kevin and Lin, Charles Y and Will, Christine M and Popovic, Relja and Ezponda, Teresa and Bradner, James E and Golden, Aaron A and others (2015) 'Deregulation of the Ras-Erk signaling axis modulates the enhancer landscape'. Cell reports, 12 (8):1300-1313 [Details]
(2015) 'RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships'
Nadel, J,Athanasiadou, R,Lemetre, C,Wijetunga, NA,Broin, PO,Sato, H,Zhang, ZD,Jeddeloh, J,Montagna, C,Golden, A,Seoighe, C,Greally, JM (2015) 'RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships'. Epigenetics & Chromatin, 8 [DOI] [Details]
(2015) 'Magnetospherically driven optical and radio aurorae at the end of the stellar main sequence'
Hallinan, G,Littlefair, SP,Cotter, G,Bourke, S,Harding, LK,Pineda, JS,Butler, RP,Golden, A,Basri, G,Doyle, JG,Kao, MM,Berdyugina, SV,Kuznetsov, A,Rupen, MP,Antonova, A (2015) 'Magnetospherically driven optical and radio aurorae at the end of the stellar main sequence'. Nature, 523 [DOI] [Details]
(2015) 'Integrative Metabolic Signatures for Hepatic Radiation Injury'
Kurland, Irwin Jack* and Ó Broin, Pilib* and Golden, Aaron* and Su, Gang and Meng, Fan and Liu, Laibin and Mohney, Robert and Kulkarni, Shilpa and Guha, Chandan (2015) 'Integrative Metabolic Signatures for Hepatic Radiation Injury'. Plos One, 10 (6) [Details]
(2015) 'Clinical, Histological, and Molecular Markers Associated With Allograft Loss in Transplant Glomerulopathy Patients'
Kamal, Layla and Ó Broin, Pilib and Bao, Yi and Ajaimy, Maria and Lubetzky, Michelle and Gupta, Anjali and de Boccardo, Graciela and Pullman, James and Golden, Aaron and Akalin, Enver (2015) 'Clinical, Histological, and Molecular Markers Associated With Allograft Loss in Transplant Glomerulopathy Patients'. Transplantation, [Details]
(2014) 'Role of the tumor suppressor IQGAP2 in metabolic homeostasis: possible link between diabetes and cancer'
Vaitheesvaran, B and Hartil, K and Navare, A and Zheng, C and Ó Broin, P and Golden, A and Guha, C and Lee, WN and Kurland, IJ and Bruce, JE (2014) 'Role of the tumor suppressor IQGAP2 in metabolic homeostasis: possible link between diabetes and cancer'. Metabolomics, :1-18 [Details]
(2014) 'Increased intragraft rejection--associated gene transcripts in patients with donor-specific antibodies and normal biopsies'
Hayde, Nicole and Ó Broin, Pilib and Bao, Yi and de Boccardo, Graciela and Lubetzky, Michelle and Ajaimy, Maria and Pullman, James and Colovai, Adriana and Golden, Aaron and Akalin, Enver (2014) 'Increased intragraft rejection--associated gene transcripts in patients with donor-specific antibodies and normal biopsies'. Kidney Int, [Details]
(2014) 'Genomics of BK viremia in kidney transplant recipients'
Lubetzky, Michelle and Bao, Yi and Ó Broin, Pilib and Marfo, Kwaku and Ajaimy, Maria and Aljanabi, Aws and de Boccardo, Graciela and Golden, Aaron and Akalin, Enver (2014) 'Genomics of BK viremia in kidney transplant recipients'. Transplantation, 97 (4):451-456 [Details]
(2014) 'The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences'
Wijetunga, N. A. and Delahaye, F. and Zhao, Y. M. and Golden, A. and Mar, J. C. and Einstein, F. H. and Greally, J. M. (2014) 'The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences'. Nat Commun, 5 [Details]
(2013) 'Translating the TCGA breast cancer results into clinical practice: searching for therapeutic clues'
Sparano, J. A. and Golden, A. A. and Montagna, C. (2013) 'Translating the TCGA breast cancer results into clinical practice: searching for therapeutic clues'. Oncology (Williston Park, N.Y.), 27 (12) [Details]
(2013) 'Spin-orbit alignment in the very low mass binary regime. The L dwarf tight binary 2MASSW J0746425+200032AB'
Harding (2013) 'Spin-orbit alignment in the very low mass binary regime. The L dwarf tight binary 2MASSW J0746425+200032AB'. Astronomy and Astrophysics, 554 [DOI] [Details]
(2013) 'Astrogenomics: big data, old problems, old solutions?'
Golden, A. and Djorgovski, S. and Greally, J. M. (2013) 'Astrogenomics: big data, old problems, old solutions?'. Genome Biol, 14 (8) [Details]
(2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'
Geeleher, P. and Hartnett, L. and Egan, L. J. and Golden, A. and Raja Ali, R. A. and Seoighe, C. (2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'. Bioinformatics, 29 (15):1851-1857 [Details]
(2013) 'VizieR Online Data Catalog: Radio survey of ultracool dwarfs (Antonova+, 2013)'
Antonova (2013) 'VizieR Online Data Catalog: Radio survey of ultracool dwarfs (Antonova+, 2013)'. VizieR Online Data Catalog, 354 [Details]
(2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'
Geeleher, P,Hartnett, L,Egan, LJ,Golden, A,Ali, RAR,Seoighe, C (2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'. Bioinformatics, 29 :1851-1857 [DOI] [Details]
(2013) 'An AIPS-based, distributed processing method for large radio interferometric datasets'
Bourke, S,van Langevelde, HJ,Torstensson, K,Golden, A (2013) 'An AIPS-based, distributed processing method for large radio interferometric datasets'. Experimental Astronomy, 36 :59-76 [DOI] [Details]
(2013) 'Spin-orbit alignment in the very low mass binary regime The L dwarf tight binary 2MASSW J0746425+200032AB'
Harding, LK,Hallinan, G,Konopacky, QM,Kratter, KM,Boyle, RP,Butler, RF,Golden, A (2013) 'Spin-orbit alignment in the very low mass binary regime The L dwarf tight binary 2MASSW J0746425+200032AB'. Astronomy & Astrophysics, 554 [DOI] [Details]
(2013) 'Volume-limited radio survey of ultracool dwarfs'
Antonova, A,Hallinan, G,Doyle, JG,Yu, S,Kuznetsov, A,Metodieva, Y,Golden, A,Cruz, KL (2013) 'Volume-limited radio survey of ultracool dwarfs'. Astronomy & Astrophysics, 549 [DOI] [Details]
(2013) 'LOOKING FOR A PULSE: A SEARCH FOR ROTATIONALLY MODULATED RADIO EMISSION FROM THE HOT JUPITER, tau BOOTIS b'
Hallinan, G,Sirothia, SK,Antonova, A,Ishwara-Chandra, CH,Bourke, S,Doyle, JG,Hartman, J,Golden, A (2013) 'LOOKING FOR A PULSE: A SEARCH FOR ROTATIONALLY MODULATED RADIO EMISSION FROM THE HOT JUPITER, tau BOOTIS b'. Astrophysical Journal, 762 [DOI] [Details]
(2013) 'Periodic Optical Variability of Radio Detected Ultracool Dwarfs'
Harding L.K., Hallinan G., Boyle R. P., Golden A., Singh N., Sheehan B., Zavala R., Butler R. F. (2013) 'Periodic Optical Variability of Radio Detected Ultracool Dwarfs'. The Astrophysical Journal, [Details]
(2012) 'The Einstein Genome Gateway using WASP-A High Throughput Multi-Layered Life Sciences Portal for XSEDE'
Golden, A and McLellan, AS and Dubin, RA and Jing, Q and Ó Broin, P and Moskowitz, D and Zhang, Z and Suzuki, M and Hargitai, J and Calder, RB and others (2012) 'The Einstein Genome Gateway using WASP-A High Throughput Multi-Layered Life Sciences Portal for XSEDE'. Stud Health Technol Inform, 175 :182-191 [Details]
(2012) 'The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE'
Golden, A. and McLellan, A. S. and Dubin, R. A. and Jing, Q. and O Broin, P. and Moskowitz, D. and Zhang, Z. and Suzuki, M. and Hargitai, J. and Calder, R. B. and Greally, J. M. (2012) 'The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE'. Stud Health Technol Inform, 175 :182-191 [Details]
(2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'
McLellan, A. S. and Dubin, R. A. and Jing, Q. and Broin, P. O. and Moskowitz, D. and Suzuki, M. and Calder, R. B. and Hargitai, J. and Golden, A. and Greally, J. M. (2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'. Genomics, 100 (6):345-351 [Details]
(2012) 'Comparative Analysis of Two Formation Scenarios of Bursty Radio Emission from Ultracool Dwarfs'
Kuznetsov (2012) 'Comparative Analysis of Two Formation Scenarios of Bursty Radio Emission from Ultracool Dwarfs'. Astrophysical Journal, 746 [DOI] [Details]
(2012) 'The regulatory effect of miRNAs is a heritable genetic trait in humans'
Geeleher, P,Huang, RS,Gamazon, ER,Golden, A,Seoighe, C (2012) 'The regulatory effect of miRNAs is a heritable genetic trait in humans'. BMC Genomics, 13 [DOI] [Details]
(2012) 'The Einstein Genome Gateway using WASP-A High Throughput Multi-Layered Life Sciences Portal for XSEDE'
Golden, A and McLellan, AS and Dubin, RA and Jing, Q and O Broin, P and Moskowitz, D and Zhang, Z and Suzuki, M and Hargitai, J and Calder, RB and others (2012) 'The Einstein Genome Gateway using WASP-A High Throughput Multi-Layered Life Sciences Portal for XSEDE'. Stud Health Technol Inform, 175 :182-191 [Details]
(2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'
McLellan, Andrew S and Dubin, Robert A and Jing, Qiang and Ó Broin, Pilib and Moskowitz, David and Suzuki, Masako and Calder, R Brent and Hargitai, Joseph and Golden, Aaron and Greally, John M (2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'. Genomics, 100 (6):345-351 [Details]
(2012) 'Electron-beam-induced Radio Emission from Ultracool Dwarfs'
Yu (2012) 'Electron-beam-induced Radio Emission from Ultracool Dwarfs'. Astrophysical Journal, 752 [DOI] [Details]
(2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'
Thomas, Brandon J and Rubio, Eric D and Krumm, Niklas and Broin, Pilib \'O and Bomsztyk, Karol and Welcsh, Piri and Greally, John M and Golden, Aaron A and Krumm, Anton (2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'. Epigenetics Chromatin, 4 [Details]
(2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'
Thomas, Brandon J and Rubio, Eric D and Krumm, Niklas and Ó Broin, Pilib and Bomsztyk, Karol and Welcsh, Piri and Greally, John M and Golden, Aaron A and Krumm, Anton (2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'. Epigenetics & Chromatin, 4 [Details]
(2011) 'Modelling the radio pulses of an ultracool dwarf'
Yu (2011) 'Modelling the radio pulses of an ultracool dwarf'. Astronomy and Astrophysics, 525 [DOI] [Details]
(2011) 'Inverse mapping of polarized optical emission from pulsars: basic formulation and determination of emission altitude'
McDonald (2011) 'Inverse mapping of polarized optical emission from pulsars: basic formulation and determination of emission altitude'. Monthly Notices Of The Royal Astronomical Society, 417 :730-744 [DOI] [Details]
(2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'
Thomas, B. J. and Rubio, E. D. and Krumm, N. and Broin, P. O. and Bomsztyk, K. and Welcsh, P. and Greally, J. M. and Golden, A. A. and Krumm, A. (2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'. Epigenetics Chromatin, 4 [Details]
(2010) 'Multi-frequency long-term monitoring of the ultracool dwarf TVLM 513-46546'
Antonova (2010) 'Multi-frequency long-term monitoring of the ultracool dwarf TVLM 513-46546'. Bulgarian Astronomical Journal, 14 [Details]
(2010) 'Phase connecting multi-epoch radio data for the ultracool dwarf TVLM 513-46546'
Doyle (2010) 'Phase connecting multi-epoch radio data for the ultracool dwarf TVLM 513-46546'. Astronomy and Astrophysics, 524 [DOI] [Details]
(2010) 'Investigating Magnetic Field Strengths and Topologies for Pulsing Ultracool Dwarfs: The M8.5 Dwarf TVLM 513-46546'
Antonova (2010) 'Investigating Magnetic Field Strengths and Topologies for Pulsing Ultracool Dwarfs: The M8.5 Dwarf TVLM 513-46546'. Publications de l'Observatoire Astronomique de Beograd, 90 :117-120 [Details]
(2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'
Geeleher, P. and Morris, D. and Hinde, J. P. and Golden, A. (2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'. Bioinformatics, 25 (11):1438-1439 [Details]
(2009) 'Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation'
Donald, James Mc and Golden, Aaron and Jennings, S. Gerard (2009) 'Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation'. International Journal of High Performance Computing Applications, 23 (1):42-61 [DOI] [Details]
(2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'
Kim, Marianne K-H and McGarry, Thomas J and Broin, Pilib \'O and Flatow, Jared M and Golden, Aaron A-J and Licht, Jonathan D (2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'. Proceedings of the National Academy of Sciences, 106 (27):11154-11159 [Details]
(2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'
Kim, Marianne K-H and McGarry, Thomas J and Ó Broin, Pilib and Flatow, Jared M and Golden, Aaron A-J and Licht, Jonathan D (2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'. Proceedings Of The National Academy Of Sciences Of The United States Of America, 106 (27):11154-11159 [Details]
(2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'
Geeleher, P,Morris, D,Hinde, JP,Golden, A (2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'. Bioinformatics, 25 :1438-1439 [DOI] [Details]
(2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'
Kim, M. K. and McGarry, T. J. and O Broin, P. and Flatow, J. M. and Golden, A. A. and Licht, J. D. (2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'. Proc. Natl. Acad. Sci. U.S.A, 106 (27):11154-11159 [Details]
(2008) 'A mini-survey of ultracool dwarfs at 4.9 GHz'
Antonova (2008) 'A mini-survey of ultracool dwarfs at 4.9 GHz'. Astronomy and Astrophysics, 487 :317-322 [DOI] [Details]
(2008) 'Confirmation of the Electron Cyclotron Maser Instability as the Dominant Source of Radio Emission from Very Low Mass Stars and Brown Dwarfs'
Hallinan (2008) 'Confirmation of the Electron Cyclotron Maser Instability as the Dominant Source of Radio Emission from Very Low Mass Stars and Brown Dwarfs'. Astrophysical Journal, 684 :644-653 [DOI] [Details]
(2008) 'Simultaneous absolute timing of the Crab pulsar at radio and optical wavelengths'
Oosterbroek (2008) 'Simultaneous absolute timing of the Crab pulsar at radio and optical wavelengths'. Astronomy and Astrophysics, 488 :271-277 [DOI] [Details]
(2007) 'Sporadic long-term variability in radio activity from a brown dwarf'
Antonova (2007) 'Sporadic long-term variability in radio activity from a brown dwarf'. Astronomy and Astrophysics, 472 :257-260 [DOI] [Details]
(2007) 'Pulsating coherent radio emission from ultracool dwarfs'
Hallinan (2007) 'Pulsating coherent radio emission from ultracool dwarfs'. Memorie della Societa Astronomica Italiana, 78 [Details]
(2007) 'Rotational modulation of M/L dwarfs due to magnetic spots'
Lane, C,Hallinan, G,Zavala, RT,Butler, RF,Boyle, RP,Bourke, S,Antonova, A,Doyle, JG,Vrba, FJ,Golden, A (2007) 'Rotational modulation of M/L dwarfs due to magnetic spots'. Astrophysical Journal, 668 :163-166 [Details]
(2007) 'Periodic bursts of coherent radio emission from an ultracool dwarf'
Hallinan, G,Bourke, S,Lane, C,Antonova, A,Zavala, RT,Brisken, WF,Boyle, RP,Vrba, FJ,Doyle, JG,Golden, A (2007) 'Periodic bursts of coherent radio emission from an ultracool dwarf'. Astrophysical Journal, 663 :25-28 [Details]
(2007) 'CG dinucleotide clustering is a species-specific property of the genome'
Glass, JL,Thompson, RF,Khulan, B,Figueroa, ME,Olivier, EN,Oakley, EJ,Van Zant, G,Bouhassira, EE,Melnick, A,Golden, A,Fazzari, MJ,Greally, JM (2007) 'CG dinucleotide clustering is a species-specific property of the genome'. Nucleic Acids Research, 35 :6798-6807 [DOI] [Details]
(2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'
Mahony, S,Benos, PV,Smith, TJ,Golden, A (2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'. Neural Networks, 19 :950-962 [DOI] [Details]
(2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'
Mahony, S. and Benos, P. V. and Smith, T. J. and Golden, A. (2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'. Neural Netw, 19 (6-7):950-962 [Details]
(2006) 'Rotational Modulation of the Radio Emission from the M9 Dwarf TVLM 513-46546: Broadband Coherent Emission at the Substellar Boundary?'
Hallinan (2006) 'Rotational Modulation of the Radio Emission from the M9 Dwarf TVLM 513-46546: Broadband Coherent Emission at the Substellar Boundary?'. Astrophysical Journal, 653 :690-699 [DOI] [Details]
(2005) 'A MERLIN observation of PSR B1951+32 and its associated plerion'
Golden, A,Bourke, S,Clyne, G,Butler, RF,Shearer, A,Muxlow, TWB,Brisken, WF (2005) 'A MERLIN observation of PSR B1951+32 and its associated plerion'. Astrophysical Journal, 635 :153-156 [Details]
(2005) 'MERLIN Observations of PSR B1951+32 and its associated plerion '
Bourke (2005) 'MERLIN Observations of PSR B1951+32 and its associated plerion '. Memorie della Societa Astronomica Italiana, 76 [Details]
(2005) 'A Radio Telescope for Ireland'
Gabuzda (2005) 'A Radio Telescope for Ireland'. Baltic Astronomy, 14 :451-454 [Details]
(2005) 'Implications of a VLBA Parallax for PSR B0656+14'
Golden (2005) 'Implications of a VLBA Parallax for PSR B0656+14'. Baltic Astronomy, 14 :436-439 [Details]
(2005) 'Transcription factor binding site identification using the self-organizing map'
Mahony, S. and Hendrix, D. and Golden, A. and Smith, T. J. and Rokhsar, D. S. (2005) 'Transcription factor binding site identification using the self-organizing map'. Bioinformatics, 21 (9):1807-1814 [Details]
(2005) 'Synchrotron Self-Absorption in Pulsar Magnetospheres: Implications for Optical Emission'
O'Connor (2005) 'Synchrotron Self-Absorption in Pulsar Magnetospheres: Implications for Optical Emission'. Astrophysical Journal, 631 :471-479 [DOI] [Details]
(2005) 'Improved detection of DNA motifs using a self-organized clustering of familial binding profiles'
Mahony, S,Golden, A,Smith, TJ,Benos, PV (2005) 'Improved detection of DNA motifs using a self-organized clustering of familial binding profiles'. Bioinformatics, 21 :283-291 [DOI] [Details]
(2005) 'Self-organizing maps of position weight matrices for motif discovery in biological sequences'
Mahony, S,Hendrix, D,Smith, TJ,Golden, A (2005) 'Self-organizing maps of position weight matrices for motif discovery in biological sequences'. Artificial Intelligence Review, 24 :397-413 [DOI] [Details]
(2005) 'Transcription factor binding site identification using the self-organizing map'
Mahony, S,Hendrix, D,Golden, A,Smith, TJ,Rokhsar, DS (2005) 'Transcription factor binding site identification using the self-organizing map'. Bioinformatics, 21 :1807-1814 [DOI] [Details]
(2004) 'FAVOR (FAst Variability Optical Registration) - two-telescope complex for detection and investigation of short optical transients'
Karpov (2004) 'FAVOR (FAst Variability Optical Registration) - two-telescope complex for detection and investigation of short optical transients'. Astronomische Nachrichten, 325 :677-677 [DOI] [Details]
(2004) 'Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models'
Mahony, S,McInerney, JO,Smith, TJ,Golden, A (2004) 'Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models'. BMC Bioinformatics, 5 [DOI] [ARAN Link] [Details]
(2003) 'Pulsar PSR B0656+14, the monogem ring, and the origin of the knee in the primary cosmic-ray spectrum'
Thorsett, SE,Benjamin, RA,Brisken, WF,Golden, A,Goss, WM (2003) 'Pulsar PSR B0656+14, the monogem ring, and the origin of the knee in the primary cosmic-ray spectrum'. Astrophysical Journal, 592 :71-73 [Details]
(2003) 'The distance and radius of the neutron star PSR B0656+14'
Brisken, WF,Thorsett, SE,Golden, A,Goss, WM (2003) 'The distance and radius of the neutron star PSR B0656+14'. Astrophysical Journal, 593 :89-92 [Details]
(2003) 'Enhanced Optical Emission During Crab Giant Radio Pulses'
Shearer (2003) 'Enhanced Optical Emission During Crab Giant Radio Pulses'. Science, 301 :493-495 [DOI] [Details]
(2002) 'European collaboration towards the Astronomical DataGrid'
Golev (2002) 'European collaboration towards the Astronomical DataGrid'. Publications de l'Observatoire Astronomique de Beograd, 73 :37-48 [Details]
(2002) 'Detection of new optical counterpart candidates to PSR B1951+32 with HST/WFPC2'
Butler (2002) 'Detection of new optical counterpart candidates to PSR B1951+32 with HST/WFPC2'. Astronomy and Astrophysics, 395 :845-851 [DOI] [Details]
(2001) 'Implications of the Optical Observations of Isolated Neutron Stars'
Shearer (2001) 'Implications of the Optical Observations of Isolated Neutron Stars'. Astrophysical Journal, 547 :967-972 [DOI] [Details]
(2001) 'A search for the optical counterpart to PSR B1821-24 in M 28'
Golden (2001) 'A search for the optical counterpart to PSR B1821-24 in M 28'. Astronomy and Astrophysics, 371 :198-204 [DOI] [Details]
(2000) 'A possible connection between gamma-ray bursts and single black holes'
Beskin (2000) 'A possible connection between gamma-ray bursts and single black holes'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Unpulsed Optical Emission from the Crab Pulsar'
Golden (2000) 'Unpulsed Optical Emission from the Crab Pulsar'. Astrophysical Journal, 535 :373-378 [DOI] [Details]
(2000) 'Results and prospects of the search for single stellar mass black holes'
Beskin (2000) 'Results and prospects of the search for single stellar mass black holes'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Scanning telescope for optical transient detection simultaneously with the gamma-ray bursters'
Beskin (2000) 'Scanning telescope for optical transient detection simultaneously with the gamma-ray bursters'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Gravlensing as a tool for reconstruction of the all-ranges transient behaviour during cosmological gamma-ray bursters'
Beskin (2000) 'Gravlensing as a tool for reconstruction of the all-ranges transient behaviour during cosmological gamma-ray bursters'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'A possible connection between gamma-ray bursts and single black holes'
Beskin (2000) 'A possible connection between gamma-ray bursts and single black holes'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Results and prospects of the search for single stellar mass black holes'
Beskin (2000) 'Results and prospects of the search for single stellar mass black holes'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'High speed phase-resolved 2-d UBV photometry of the Crab pulsar'
Golden (2000) 'High speed phase-resolved 2-d UBV photometry of the Crab pulsar'. Astronomy and Astrophysics, 363 :617-628 [Details]
(2000) 'Scanning telescope for optical transient detection simultaneously with the gamma-ray bursters'
Beskin (2000) 'Scanning telescope for optical transient detection simultaneously with the gamma-ray bursters'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Implications of phase-resolved optical emission from isolated neutron stars'
Shearer (2000) 'Implications of phase-resolved optical emission from isolated neutron stars'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Gravlensing as a tool for reconstruction of the all-ranges transient behaviour during cosmological gamma-ray bursters'
Beskin (2000) 'Gravlensing as a tool for reconstruction of the all-ranges transient behaviour during cosmological gamma-ray bursters'. Nuclear Physics B Proceedings Supplements, 80 [Details]
(2000) 'Extreme Ultraviolet Explorer observations of PSR B0656+14'
Edelstein, J,Seon, KI,Golden, A,Min, KW (2000) 'Extreme Ultraviolet Explorer observations of PSR B0656+14'. Astrophysical Journal, 539 :902-907 [Details]
(1999) 'Phase-Resolved Optical Emission from Isolated Neutron Stars'
Shearer (1999) 'Phase-Resolved Optical Emission from Isolated Neutron Stars'. Irish Astronomical Journal, 26 [Details]
(1999) 'A possible connection between gamma-ray bursts and single black holes'
Beskin (1999) 'A possible connection between gamma-ray bursts and single black holes'. Astronomy and Astrophysics Supplement, 138 :509-510 [DOI] [Details]
(1999) 'Catching the light curve of a flaring GRB. The opportunity offered by gravitational lensing'
Beskin (1999) 'Catching the light curve of a flaring GRB. The opportunity offered by gravitational lensing'. Astronomy and Astrophysics Supplement, 138 :587-588 [DOI] [Details]
(1999) 'Investigations of gamma-ray bursters light curves in different ranges by means of gravlensing'
Beskin (1999) 'Investigations of gamma-ray bursters light curves in different ranges by means of gravlensing'. Gravitation and Cosmology, 5 :219-222 [Details]
(1999) 'Investigation of Gamma-Ray Burst light curves in different spectral ranges by means of gravitational lensing'
Beskin (1999) 'Investigation of Gamma-Ray Burst light curves in different spectral ranges by means of gravitational lensing'. Nuclear Physics B Proceedings Supplements, 69 :703-706 [DOI] [Details]
(1999) 'Catching the light curve of flaring GRBs: The opportunity offered by scanning telescopes'
Beskin (1999) 'Catching the light curve of flaring GRBs: The opportunity offered by scanning telescopes'. Astronomy & Astrophysics Supplement Series, 138 :589-590 [DOI] [Details]
(1999) 'Radius and distance estimates of the isolated neutron stars Geminga and PSR B0656+14 using optical photometry'
Golden, A,Shearer, A (1999) 'Radius and distance estimates of the isolated neutron stars Geminga and PSR B0656+14 using optical photometry'. Astronomy & Astrophysics, 342 :5-8 [Details]
(1999) 'Investigation of Gamma-Ray Burst light curves in different spectral ranges by means of gravitational lensing'
Beskin, GM,Shearer, A,Redfern, M,Golden, A,Butler, R,Bartolini, C,Guarnieri, A,Masetti, N,Piccioni, A (1999) 'Investigation of Gamma-Ray Burst light curves in different spectral ranges by means of gravitational lensing'. Nuclear Physics B-Proceedings Supplements, 69 :703-706 [Details]
(1998) 'Possible pulsed optical emission from Geminga'
Shearer, A,Golden, A,Harfst, S,Butler, R,Redfern, RM,O'Sullivan, CMM,Neustroev, VV,Plokhotnichenko, VL,Cullum, M,Danks, A (1998) 'Possible pulsed optical emission from Geminga'. Astronomy & Astrophysics, 335 :21-24 [Details]
(1998) 'A search for the optical counterpart of PSR B1951+32 in the supernova remnant CTB 80'
O'Sullivan (1998) 'A search for the optical counterpart of PSR B1951+32 in the supernova remnant CTB 80'. Astronomy and Astrophysics, 335 :991-994 [Details]
(1998) 'Time-resolved optical observations of PSR 1509-58'
Shearer, A,O'Sullivan, CMM,Golden, A,Garcia, PVR,Redfern, M,Danks, A,Cullum, M (1998) 'Time-resolved optical observations of PSR 1509-58'. Astronomy & Astrophysics, 333 :16-18 [Details]
(1997) 'PSR J0633+1746'
Shearer (1997) 'PSR J0633+1746'. International Astronomical Union Circular, 6787 [Details]
(1997) 'Pulsed optical emission from PSR 0656+141'
Shearer, A,Redfern, RM,Gorman, G,Butler, R,Golden, A,OKane, P,Beskin, GM,Neizvestny, SI,Neustroev, VV,Plokhotnichenko, VL,Cullum, M (1997) 'Pulsed optical emission from PSR 0656+141'. Astrophysical Journal, 487 :181-185 [Details]
(1996) 'PSR B0656+14'
Shearer (1996) 'PSR B0656+14'. International Astronomical Union Circular, 6502 [Details]

Book Chapters

  Year Publication
(2013) 'Chromatin Signature'
Thomas, Brandon J and Rubio, Eric D and Krumm, Niklas and Ó Broin, Pilib and Bomsztyk, Karol and Welcsh, Piri and Greally, John M and Golden, Aaron A and Krumm, Anton (2013) 'Chromatin Signature' In: Epigenetics, environment, and genes. New Jersey: CRC Press. [Details]

Conference Publications

  Year Publication
(2012) A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process?
Harding, LK,Hallinan, G,Boyle, RP,Butler, RE,Sheehan, B,Golden, A,JohnsKrull, CM,Browning, MK,West, AA (2012) 16TH CAMBRIDGE WORKSHOP ON COOL STARS, STELLAR SYSTEMS AND THE SUN A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process? , pp.219-226 [Details]
(2004) SPIE Astronomical Telescopes+ Instrumentation
Voisin, Bruno and Micol, Alberto and O'Tuairisg, Seathrun and Butler, Raymond F and Golden, Aaron and Shearer, Andrew (2004) Simulating instruments for mining uncalibrated archives . In: Quinn,P.J.; Bridger,A.; Proc SPIE Optimizing Scientific Return for Astronomy through Informatio eds. SPIE Astronomical Telescopes+ Instrumentation , pp.294-301 [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Tuairisg, S\'O and Butler, Ray and Golden, Aaron and Shearer, Andrew and Voisin, Bruno and Micol, Alberto (2004) Automated reduction and analysis of images from multiple data archives . In: Ochsenbein,F.; Allen,G., ASP Conf Series 314 eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) SPIE Astronomical Telescopes+ Instrumentation
O'Tuairisg, Seathrun and Golden, Aaron and Butler, Raymond F and Shearer, Andrew and Voisin, Bruno (2004) A pipeline for automatically processing and analyzing archival images from multiple instruments SPIE Astronomical Telescopes+ Instrumentation , pp.467-473 [Details]
(2005) SPIE Opto-Ireland 2005: Imaging and Vision
Kieran P. Forde ; Raymond F. Butler ; David Peat ; Aaron Golden ; Seathrun O'Tuairisg (2005) Spectrophotometry: imaging with custom narrow-band filters and an automated data-reduction pipeline SPIE Opto-Ireland 2005: Imaging and Vision [Details]
(2013) Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery
Rhee, David and Hargitai, Joseph and Calder, R Brent and Broin, Pilib \'O and Shieh, Kevin and Golden, Aaron (2013) 'Spring through the gateway': deploying genomic workflows with XSEDE Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery [Details]
(2013) Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery
Rhee, David and Hargitai, Joseph and Calder, R Brent and Ó Broin, Pilib and Shieh, Kevin and Golden, Aaron (2013) 'Spring through the gateway': deploying genomic workflows with XSEDE Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery [Details]
(2014) HEPATOLOGY
Sharma, Yogeshwar and Tchaikovskaya, Tatyana and Viswanathan, Preeti and Rhee, David B and Ó Broin, Pilib and Gorbacheva, Tatyana and Maslov, Alexander Y and Golden, Aaron and Gupta, Sanjeev (2014) Characterization of Exosomal microRNA (miRNA) Content Following Hepatic Injury And Roles in Cytoprotection After Uptake of Exosomes By Injured Hepatocytes HEPATOLOGY , pp.825-826 [Details]
(2014) Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment
Shieh, Kevin and Ó Broin, Pilib and Rhee, David and Levy, Matthew and Golden, Aaron (2014) Using SAGA and the Open Science Grid to Search for Aptamers Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment [Details]
(2014) Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment
Shieh, Kevin and Broin, Pilib \'O and Rhee, David and Levy, Matthew and Golden, Aaron (2014) Using SAGA and the Open Science Grid to Search for Aptamers Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment [Details]
(2014) TRANSPLANTATION
Gupta, A and Broin, PO and Bao, Y and Golden, A and Akalin, E (2014) Clinical and Molecular Significance of Microcirculation Inflammation in Transplant Kidney Biopsies TRANSPLANTATION , pp.139-139 [Details]
(2014) TRANSPLANTATION
Gupta, A and Ó Broin, P and Bao, Y and Golden, A and Akalin, E (2014) Clinical and Molecular Significance of Microcirculation Inflammation in Transplant Kidney Biopsies TRANSPLANTATION , pp.139-139 [Details]
(2014) TRANSPLANTATION
Kamal, L and Ó Broin, P and Bao, Y and Golden, A and Akalin, E (2014) Increased Intragraft Endothelial Cell and Interferon-gamma Associated Transcripts and Banff Chronic Allograft Glomerulopathy (cg) Score Predict the Graft Loss in Transplant Glomerulopathy TRANSPLANTATION , pp.468-469 [Details]
(2014) TRANSPLANTATION
Kamal, L and Broin, PO and Bao, Y and Golden, A and Akalin, E (2014) Increased Intragraft Endothelial Cell and Interferon-gamma Associated Transcripts and Banff Chronic Allograft Glomerulopathy (cg) Score Predict the Graft Loss in Transplant Glomerulopathy TRANSPLANTATION , pp.468-469 [Details]
(2012) ASP Conference Series, Vol. 448: 16th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun
Harding, L. K.; Hallinan, G.; Boyle, R. P.; Butler, R. F.; Sheehan, B.; Golden, A. (2012) A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process? . In: Christopher M. Johns-Krull, Matthew K. Browning, and Andrew A. West eds. ASP Conference Series, Vol. 448: 16th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun University of Washington, Seattle, Washington, , 28-AUG-10 - 02-SEP-10 [Details]
(2011) American Astronomical Society, AAS Meeting #218, #326.12; Bulletin of the American Astronomical Society
Boyle, Richard P.; Harding, L. K.; Hallinan, G.; Butler, R. F.; Golden, A. (2011) An Investigation into the Periodic Optical Variability of Radio Detected Ultracool Dwarfs using the GUFI Photometer American Astronomical Society, AAS Meeting #218, #326.12; Bulletin of the American Astronomical Society [Details]
(2011) A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process?
Harding, LK,Hallinan, G,Boyle, RP,Butler, RF,Sheehan, B,Golden, A,JohnsKrull, CMJ,Browning, MK,West, AA (2011) 16TH CAMBRIDGE WORKSHOP ON COOL STARS, STELLAR SYSTEMS AND THE SUN A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process? , pp.219-227 [Details]
(2010) European Planetary Science Congress 2010
Hallinan (2010) Looking for a Radio Pulse from Hot Jupiters European Planetary Science Congress 2010 [Details]
(2009) Mapping the Radio Coronae of Cool Stars and Brown Dwarfs
Hallinan, G,Doyle, G,Antonova, A,Bourke, S,Jardine, M,Donati, JF,Morin, J,Golden, A,Stempels, E (2009) COOL STARS, STELLAR SYSTEMS AND THE SUN Mapping the Radio Coronae of Cool Stars and Brown Dwarfs , pp.146-151 [Details]
(2009) 15th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun
Hallinan (2009) Mapping the Radio Coronae of Cool Stars and Brown Dwarfs . In: Stempels eds. 15th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun , pp.146-151 [Details]
(2007) Gene prediction in metagenomic libraries using the self organising map and high performance computing techniques
Mccoy, N,Mahony, S,Golden, A,Dubitzky, W,Schuster, A,Sloot, PMA,Schroeder, M,Romberg, M (2007) Distributed, High-Performance and Grid Computing in Computational Biology, Proceedings Gene prediction in metagenomic libraries using the self organising map and high performance computing techniques , pp.99-109 [Details]
(2006) Proceedings of the 8th European VLBI Network Symposium
Bourke (2006) Analysing very large datasets with ParselTongue Proceedings of the 8th European VLBI Network Symposium [Details]
(2006) Astronomical Data Analysis Software and Systems XV
Cunniffe (2006) Self-Consistent Data Quality Recovery - A Study of the DENIS Photometric Calibration Archive . In: Gabriel eds. Astronomical Data Analysis Software and Systems XV [Details]
(2006) 36th COSPAR Scientific Assembly
Clyne (2006) Pulsar wind nebulae bow shock interactions in supernova remnants 36th COSPAR Scientific Assembly [Details]
(2005) BALTIC ASTRONOMY
GOLDEN, A. et al. (2005) Implications of a VLBA parallax for PSR B0656+14 BALTIC ASTRONOMY , pp.436-439 [Details]
(2005) Opto-Ireland 2005: Imaging and Vision
Forde (2005) Spectrophotometry: imaging with custom narrow-band filters and an automated data-reduction pipeline . In: Murtagh eds. Opto-Ireland 2005: Imaging and Vision , pp.216-224 [Details]
(2005) Future Directions in High Resolution Astronomy
Gabuzda (2005) ARTI -- A Radio Telescope for Ireland . In: Romney eds. Future Directions in High Resolution Astronomy [Details]
(2005) Spectrophotometry: imaging with custom narrow-band filters and an automated data-reduction pipeline
Forde, KP,Butler, RF,Peat, D,Golden, A,O' Tuairisg, S,Murtagh, FD,McMillan, ND (2005) Opto-Ireland 2005: Imaging and Vision Spectrophotometry: imaging with custom narrow-band filters and an automated data-reduction pipeline , pp.216-224 [DOI] [Details]
(2005) MERLIN Observations of PSR B1951+32 and its associated plerion
Bourke, S,Clyne, G,Brisken, WF,Muxlow, TWB,Golden, A,PerezTorres, MA (2005) Stellar End Products MERLIN Observations of PSR B1951+32 and its associated plerion , pp.580-582 [Details]
(2004) OPTIMIZING SCIENTIFIC RETURN FOR ASTRONOMY THROUGH INFORMATION TECHNOLOGIES
Tuairisg, SO,Golden, A,Butler, R,Shearer, A,Voisin, B,Quinn, PJ,Bridger, A (2004) A pipeline for automatically processing and analysing archival images from multiple instruments OPTIMIZING SCIENTIFIC RETURN FOR ASTRONOMY THROUGH INFORMATION TECHNOLOGIES , pp.467-473 [DOI] [Details]
(2004) ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS XIII
Voisin, B,O Tuairisg, S,Butler, R,Golden, A,Shearer, A,Micol, A,Ochsenbein, F,Allen, MG,Egret, D (2004) Using a reversed exposure time calculator for querying uncalibrated archives . In: Ochsenbein, F eds. ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS XIII , pp.125-128 [Details]
(2004) ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS XIII
Tuairisg, SO,Butler, R,Golden, A,Shearer, A,Voisin, B,Micol, A,Ochsenbein, F,Allen, MG,Egret, D (2004) Automated reduction and analysis of images from multiple data archives . In: Ochsenbein, F eds. ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS XIII , pp.444-447 [Details]
(2004) OPTIMIZING SCIENTIFIC RETURN FOR ASTRONOMY THROUGH INFORMATION TECHNOLOGIES
Voisin, B,Micol, A,O'Tuairisg, S,Butler, R,Golden, A,Shearer, A,Quinn, PJ,Bridger, A (2004) Simulating instruments for mining uncalibrated archives OPTIMIZING SCIENTIFIC RETURN FOR ASTRONOMY THROUGH INFORMATION TECHNOLOGIES , pp.294-301 [DOI] [Details]
(2004) A new search for mu s time scale radio pulses
Demorest, P,Werthimer, D,Anderson, D,Golden, A,Ekers, R (2004) BIOASTRONOMY 2002: LIFE AMONG THE STARS A new search for mu s time scale radio pulses , pp.479-482 [Details]
(2004) Optimizing Scientific Return for Astronomy through Information Technologies
Voisin (2004) Simulating instruments for mining uncalibrated archives . In: Quinn eds. Optimizing Scientific Return for Astronomy through Information Technologies , pp.294-301 [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Tuairisg (2004) Automated reduction and analysis of images from multiple data archives . In: Ochsenbein eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) Optimizing Scientific Return for Astronomy through Information Technologies
O'Tuairisg (2004) A pipeline for automatically processing and analyzing archival images from multiple instruments . In: Quinn eds. Optimizing Scientific Return for Astronomy through Information Technologies , pp.467-473 [Details]
(2004) Toward an International Virtual Observatory
Murtagh (2004) iAstro: Computational and Information Infrastructure in the Astronomical DataGrid . In: Quinn eds. Toward an International Virtual Observatory [Details]
(2004) Bioastronomy 2002: Life Among the Stars
Demorest (2004) A New Search for $\mu$s Time Scale Radio Pulses . In: Norris eds. Bioastronomy 2002: Life Among the Stars [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Cunniffe (2004) Efficient data mining in the X-ray sky background . In: Ochsenbein eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) 35th COSPAR Scientific Assembly
Clyne (2004) The interaction of the pulsar wind nebula of PSR B1951+32 with the supernova remnant CTB80 and the possibility of shock breakout . In: Paill\'e eds. 35th COSPAR Scientific Assembly [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Voisin (2004) Using a Reversed Exposure Time Calculator for Querying Uncalibrated Archives . In: Ochsenbein eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Tuairisg (2004) Automated reduction and analysis of images from multiple data archives . In: Ochsenbein eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) Toward an International Virtual Observatory
Murtagh (2004) iAstro: Computational and Information Infrastructure in the Astronomical DataGrid . In: Quinn eds. Toward an International Virtual Observatory [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Voisin, Bruno and Micol, A and Tuairisg, S\'O and Butler, R and Golden, A and Shearer, A (2004) Using a Reversed Exposure Time Calculator for Querying Uncalibrated Archives . In: Ochsenbein,F.; Allen,G., ASP Conf Series 314 eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2003) American Astronomical Society Meeting Abstracts
Lazio (2003) Toward Microarcsecond Astrometry: Pulsars and the Very Long Baseline Array American Astronomical Society Meeting Abstracts [Details]
(2003) Opto-Ireland 2002: Optical Metrology, Imaging, and Machine Vision
Butler (2003) Image PSF-matching and subtraction: a powerful astronomical technique and its application to industrial imaging . In: Shearer eds. Opto-Ireland 2002: Optical Metrology, Imaging, and Machine Vision , pp.201-212 [Details]
(2003) OPTP-IRELAND 2002: OPTICAL METROLOGY, IMAGING, AND MACHINE VISION
Butler, RF,O'Tuairisg, S,Shearer, A,Golden, A,Shearer, A,Murtagh, FD,Mahon, J,Whelan, PF (2003) Image PSF-matching and subtraction: a powerful astronomical technique and its application to industrial imaging . In: Shearer, A eds. OPTP-IRELAND 2002: OPTICAL METROLOGY, IMAGING, AND MACHINE VISION , pp.201-212 [Details]
(2002) 34th COSPAR Scientific Assembly
Golden (2002) High resolution radio imaging of a pulsar wind SNR interaction zone - PSR B1951+32/CTB 80 34th COSPAR Scientific Assembly [Details]
(2002) Neutron Stars in Supernova Remnants
Golden (2002) Characterizing the Optical Counterpart to PSR B1951+32 in CTB 80 . In: Slane eds. Neutron Stars in Supernova Remnants [Details]
(2002) NEUTRON STARS IN SUPERNOVA REMNANTS
Golden, A,Butler, RF,Shearer, A,Slane, PO,Gaensler, BM (2002) Characterizing the optical counterpart to PSR B1951+32 in CTB 80 . In: Slane, PO eds. NEUTRON STARS IN SUPERNOVA REMNANTS , pp.61-64 [Details]
(2002) Neutron Stars, Pulsars, and Supernova Remnants
Butler (2002) PSR B1951+32 and PSR J0537-6910 - where are the optical counterparts? . In: Becker eds. Neutron Stars, Pulsars, and Supernova Remnants [Details]
(2002) Continuing the Challenge of EUV Astronomy: Current Analysis and Prospects for the Future
Golden (2002) `For now we see through the ISM, darkly' ...EUVE's view of Neutron Stars . In: Howell eds. Continuing the Challenge of EUV Astronomy: Current Analysis and Prospects for the Future [Details]
(2002) Astronomical Site Evaluation in the Visible and Radio Range
Gizani (2002) MERLIN telescopes: New site RFI surveys and a possible new MERLIN Irish, radio telescope (Poster) . In: Vernin eds. Astronomical Site Evaluation in the Visible and Radio Range [Details]
(2002) 34th COSPAR Scientific Assembly
Connor (2002) Modeling of non-thermal optical emission from isolated spin-powered neutron stars 34th COSPAR Scientific Assembly [Details]
(2002) 34th COSPAR Scientific Assembly
Seon (2002) A Deep EUVE Observation of PSR B0656+14 34th COSPAR Scientific Assembly [Details]
(2002) Neutron Stars, Pulsars, and Supernova Remnants
Shearer (2002) Why study pulsars optically? . In: Becker eds. Neutron Stars, Pulsars, and Supernova Remnants [Details]
(2001) RELATIVISTIC ASTROPHYSICS
Shearer, A,Golden, A,O'Connor, P,Butler, R,Wheeler, JC,Martel, H (2001) Isolated neutron stars - Optical non-thermal phenomenology . In: Wheeler, JC eds. RELATIVISTIC ASTROPHYSICS , pp.562-564 [Details]
(2001) 20th Texas Symposium on relativistic astrophysics
Shearer (2001) Isolated neutron stars-Optical non-thermal phenomenology . In: Wheeler eds. 20th Texas Symposium on relativistic astrophysics , pp.562-564 [Details]
(2001) ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS X
Butler, R,Golden, A,Shearer, A,Harnden, FR,Primini, FA,Payne, HE (2001) Deconvolution of drizzled and rotated HST/WFPC2 images: Faint-object photometry in crowded fields ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS X , pp.431-434 [Details]
(2001) 20th Texas Symposium on relativistic astrophysics
O'Connor (2001) ``Inverse mapping'' of non thermal optical emission from isolated neutron stars . In: Wheeler eds. 20th Texas Symposium on relativistic astrophysics , pp.565-568 [Details]
(2001) Exo-/Astro-Biology
Golden (2001) A Virtual Laboratory model for coordinating future astrobiological research . In: Ehrenfreund eds. Exo-/Astro-Biology , pp.341-344 [Details]
(2001) EXO-/ASTRO-BIOLOGY
Golden, A,Shearer, A,Browne, J,Butler, R,Penny, A,Nuth, J,Ehrenfreund, P,Angerer, O,Battrick, B (2001) A virtual laboratory model for coordinating future astrobiological research EXO-/ASTRO-BIOLOGY , pp.341-344 [Details]
(2001) Astronomical Data Analysis Software and Systems X
Butler (2001) Deconvolution of ``Drizzled'' and Rotated HST/WFPC2 Images: Faint-object Photometry in Crowded Fields . In: Harnden eds. Astronomical Data Analysis Software and Systems X [Details]
(2001) RELATIVISTIC ASTROPHYSICS
O'Connor, P,Shearer, A,Golden, A,Eikenberry, S,Wheeler, JC,Martel, H (2001) 'Inverse mapping' of non thermal optical emission from isolated neutron stars . In: Wheeler, JC eds. RELATIVISTIC ASTROPHYSICS , pp.565-568 [Details]
(2000) IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond
Shearer (2000) Implications of the Optical Observations of Isolated Neutron Stars . In: Kramer eds. IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond [Details]
(2000) IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond
Golden (2000) Unpulsed Optical Emission from the Crab Pulsar . In: Kramer eds. IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond [Details]
(2000) IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond
Golden (2000) PSR B0656+14: Combined Optical, X-ray \amp EUV Studies . In: Kramer eds. IAU Colloq. 177: Pulsar Astronomy - 2000 and Beyond [Details]
(2000) PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177
Shearer, A,Golden, A,Beskin, G,Kramer, M,Wex, N,Wielebinski, R (2000) Implications of the optical observations of Isolated Neutron Stars PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177 , pp.307-310 [Details]
(2000) PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177
Golden, A,Shearer, A,Edelstein, J,Kramer, M,Wex, N,Wielebinski, R (2000) PSR B0656+14: Combined optical, X-ray & EUV studies PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177 , pp.299-300 [Details]
(2000) PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177
Golden, A,Shearer, A,Beskin, G,Kramer, M,Wex, N,Wielebinski, R (2000) Unpulsed optical emission from the Crab pulsar . In: Kramer eds. PULSAR ASTRONOMY - 2000 AND BEYOND: IAU COLLOQUIUM 177 , pp.297-298 [Details]
(1999) ASTRONOMY & ASTROPHYSICS SUPPLEMENT SERIES
Beskin, GM,Shearer, A,Golden, A,Bartolini, C,Guarnieri, A,Piccioni, A,Masetti, N (1999) A possible connection between gamma-ray bursts and single black holes ASTRONOMY & ASTROPHYSICS SUPPLEMENT SERIES , pp.509-510 [Details]
(1999) ASTRONOMY & ASTROPHYSICS SUPPLEMENT SERIES
Beskin, GM,Shearer, A,Golden, A,Bartolini, C,Guarnieri, A,Masetti, N,Piccioni, A (1999) Catching the light curve of a flaring GRB. The opportunity offered by gravitational lensing ASTRONOMY & ASTROPHYSICS SUPPLEMENT SERIES , pp.587-588 [Details]
(1998) 19th Texas Symposium on Relativistic Astrophysics and Cosmology
Beskin (1998) Scanning Telescope for Optical Transient Detection Simultaneously With the Gamma-ray Bursts . In: Paul eds. 19th Texas Symposium on Relativistic Astrophysics and Cosmology [Details]
(1998) Gamma-Ray Bursts, 4th Hunstville Symposium
Beskin (1998) Single black holes as parent bodies of galactic and extragalactic gamma-ray bursts . In: Meegan eds. Gamma-Ray Bursts, 4th Hunstville Symposium , pp.815-819 [Details]
(1998) 19th Texas Symposium on Relativistic Astrophysics and Cosmology
Beskin (1998) Results and Perspectives of the Search for Single Stellar Mass Black Holes . In: Paul eds. 19th Texas Symposium on Relativistic Astrophysics and Cosmology [Details]
(1998) 19th Texas Symposium on Relativistic Astrophysics and Cosmology
O'Connor (1998) Modeled results of pulsed optical emission from neutron stars . In: Paul eds. 19th Texas Symposium on Relativistic Astrophysics and Cosmology [Details]
(1998) 19th Texas Symposium on Relativistic Astrophysics and Cosmology
Shearer (1998) Implications of Phase-Resolved Optical Emission from Isolated Neutron Stars . In: Paul eds. 19th Texas Symposium on Relativistic Astrophysics and Cosmology [Details]
(1998) 19th Texas Symposium on Relativistic Astrophysics and Cosmology
Golden (1998) Unpulsed Optical Emission Studies: Geminga, PSR B0656+14 \amp the Crab . In: Paul eds. 19th Texas Symposium on Relativistic Astrophysics and Cosmology [Details]
(1998) IZVESTIYA AKADEMII NAUK SERIYA FIZICHESKAYA
Beskin, GM,Shearer, A,Golden, A,Neustroev, VV,Plokhotnichenko, VL,Redfern, RM (1998) Detection of pulsed optical emission from the nearby neutron stars PSR 0656+14 and Geminga IZVESTIYA AKADEMII NAUK SERIYA FIZICHESKAYA , pp.1782-1786 [Details]
(1997) Proceedings of the Alpbach Summer School 'Fu damental Physics in Space'
Golden, A. \& Traeger, S. (1997) GHOST - Galactic Halo Object Space Telescope . In: ESA SP-420 eds. Proceedings of the Alpbach Summer School 'Fu damental Physics in Space' [Details]

Conference Contributions

  Year Publication
(2007) Intelligent Systems in Molecular Biology/European Conference on Computational Biology (ISMB/ECCB 2007),
Aaron Golden, Pilib Ó Broin, Shaun Mahony, Anton Krumm, and John Greally (2007) Optimum Transcription Factor Binding Site Model Selection from a Self­-Organising Map ChIP-­chip Case Study. [Poster Presentation (Refereed)], Intelligent Systems in Molecular Biology/European Conference on Computational Biology (ISMB/ECCB 2007), Vienna , 01-JAN-07 - 01-JAN-07. [Details]
(2008) RECOMB Regulatory Genomics (RECOMB 2008),
Pilib Ó Broin, Terry Smith, and Aaron Golden (2008) An Evolutionary Approach to Multiple Alignment of Transcription Factor Binding Motifs. [Poster Presentation (Refereed)], RECOMB Regulatory Genomics (RECOMB 2008), Boston , 01-JAN-08 - 01-JAN-08. [Details]
(2008) Virtual Insititute of Bioinformatics Éire (VIBE 2008),
Pilib Ó Broin, Terry Smith, and Aaron Golden (2008) Generating Familial Binding Profiles by Genetic Algorithm. [Poster Presentation (Refereed)], Virtual Insititute of Bioinformatics Éire (VIBE 2008), Maynooth , 01-JAN-08 - 01-JAN-08. [Details]
(2012) RegGenSIG, Intelligent Systems in Molecular Biology (ISMB 2012),
Pilib Ó Broin, Terry Smith, and Aaron Golden (2012) A Non-Tree Based Approach to Automated Construction of Familial Binding Profiles. [Poster Presentation (Refereed)], RegGenSIG, Intelligent Systems in Molecular Biology (ISMB 2012), Long Beach, CA , 01-JAN-12 - 01-JAN-12. [Details]
(2012) 4th International Workshop on Science Gateways for Life Sciences (IWSG-Life 2012),
Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, and John M. Greally (2012) The Einstein Science Gateway using WASP: A High Throughput Multi-Layered Life Sciences Portal for XSEDE. [Poster Presentation (Refereed)], 4th International Workshop on Science Gateways for Life Sciences (IWSG-Life 2012), Amsterdam , 01-JAN-12 - 01-JAN-12. [Details]
(2012) 8th Annual International Meeting of the Metabolomics Society (Metabolomics 2012),
Irwin J. Kurland, Pilib Ó Broin, Aaron Golden, Bhavapriya Vaitheesvaran, Kirsten Hartil, Subhrajit Saha, and Chandan Guha (2012) Integrative Metabolic Signatures for Radiation Induced Damage. [Poster Presentation (Refereed)], 8th Annual International Meeting of the Metabolomics Society (Metabolomics 2012), Washington D.C , 01-JAN-12 - 01-JAN-12. [Details]
(2013) 40th Annual Meeting of the European Radiation Research Society (ERR2013),
Pilib Ó Broin, Irwin J. Kurland, Aaron Golden, and Chandan Guha (2013) Metabolic Biomarkers for Radiation-Induced Liver Damage in Mice. [Poster Presentation (Refereed)], 40th Annual Meeting of the European Radiation Research Society (ERR2013), Dublin , 01-JAN-13 - 01-JAN-13. [Details]
(2014) 2014 Annual Conference on Extreme Science and Engineering Discovery Environment (XSEDE2014),
David B. Rhee, Kevin Shieh, Pilib Ó Broin, Raquel G. Gur, Aaron Golden (2014) The International Brain and Behavior Consortium Genomics Gateway. [Poster Presentation (Refereed)], 2014 Annual Conference on Extreme Science and Engineering Discovery Environment (XSEDE2014), New York , 01-JAN-14 - 01-JAN-14. [Details]
(2014) 5th Annual Symposium in Computational Biology & Innovation,
Pilib Ó Broin, Tomohisa Takahashi, Shota Okabe, Akira Nishi, Takeshi Izumi, Michael Beckert, Gina Kang, Jose L. Pena, Kenji Tanigaki, Takefumi Kikusui, Noboru Hiroi, and Aaron Golden (2014) Analysis of Ultrasonic Mouse Vocalizations in a 22q11.2DS-associated Mouse Model of Autism Spectrum Disorder. [Poster Presentation (Refereed)], 5th Annual Symposium in Computational Biology & Innovation, Dublin , 01-JAN-14 - 01-JAN-14. [Details]

Abstract

  Year Publication
(2007) Thermodynamically constrained steady state solution space of the E-coli metabolic network.
Fleming, RMT,Golden, A,Nasheuer, HP (2007) Thermodynamically constrained steady state solution space of the E-coli metabolic network. Abstract [DOI] [Details]

ANET/COS

  Year Publication
(2013) AIPSLite: ParselTongue extension for distributed AIPS processing.
Bourke, S., van Langevelde, H.J., Torstensson K. and Golden, A. (2013) AIPSLite: ParselTongue extension for distributed AIPS processing. http://ascl.net/1310.006: ANET/COS [Details]

Meeting

  Year Publication
(2013) Analysis of the IL-6/STAT3 signalling pathway and DNA methylation patterns in patients with IBD.
Ali, RAR,Hartnett, L,Geeleher, P,Seoighe, C,Golden, A,Egan, L (2013) Analysis of the IL-6/STAT3 signalling pathway and DNA methylation patterns in patients with IBD. Meeting [Details]
(2012) Analysis of the interleukin-6/STAT3 signalling pathway and DNA methylation patterns in patients with short or long duration of IBD.
Ali, RAR,Harnett, L,Newell, J,Golden, A,Geeleher, P,Seoighe, C,Egan, L (2012) Analysis of the interleukin-6/STAT3 signalling pathway and DNA methylation patterns in patients with short or long duration of IBD. Meeting [Details]

Honours and Awards

  Year Title Awarding Body
2001 Minor planet 11451 formally named 'Aarongolden' International Astronomical Union
1998 Visiting Scholar, Department of Astronomy, UC Berkeley Education Abroad Program (UC/NUIG)
1996 Postgraduate Fellowship (NUI Galway) College of Science, NUI Galway
1994 Postgraduate Fellowship (Israeli Academy of Sciences) Israeli Academy of Sciences

Professional Associations

  Association Function From / To
American Astronomical Society Member 01-JAN-13 /
Royal Astronomical Society Fellow 01-SEP-08 /
International Astronomical Union Member 26-JUL-03 /

Education

  Year Institution Qualification Subject
1991 Trinity College Dublin Bachelor of Arts Experimental Physics
1993 Queens University of Belfast MASTERS OF SCIENCE Computational Science
1999 NUI Galway DOCTOR OF PHILOSOPHY Astronomy

Employment

  Employer Position From / To
Albert Einstein College of Medicine Associate Professor 09-MAY-11 / 19-JUN-16
NUI Galway Lecturer 01-AUG-16 /
NUI Galway Junior/College Lecturer 01-SEP-99 / 30-APR-11
Yeshiva University Research Associate Professor 01-SEP-13 / 19-JUN-16

Languages

  Language
English
French

Consultancy

  Client Description
NASA
Consultant Reviewer for the 2014 Discovery Program

Community Engagement

  Title Type From / To
Outreach Going to Moon to Look for the Cave of Dreams 16-MAR-12 / 16-MAR-12
Other ‘New Horizons’ Encounter With Pluto – Our Solar System’s Missing Link’ 20-JUL-15 / 20-JUL-15
Outreach Has Earth contaminated the solar system? The case for life on Mars 13-FEB-10 / 13-FEB-10
Outreach Going to Moon to Look for the Cave of Dreams 23-APR-09 / 23-APR-09
Outreach Touching the Void the strange world of Brown Dwarfs 28-OCT-09 / 28-OCT-09
Advocacy Galileo and the International Year of Astronomy 2009 11-NOV-09 / 11-NOV-09
Outreach Accelerated Computing Platforms and Scientific Computing 16-APR-08 / 16-APR-08
Outreach ‘Brown dwarfs and exoplanets’ 06-FEB-08 / 06-FEB-08
Outreach ‘Observing in the twilight zone at the sub-stellar boundary - are brown dwarfs stars, pulsars or planets?’ 27-JAN-07 / 27-JAN-07
Outreach ‘Genes, Germs & Greenbacks - the World of Bioinformatics’ 27-NOV-03 / 27-NOV-03
Outreach ‘Understanding the Kink in the Cosmic Ray Energy Spectrum’ 28-SEP-03 / 28-SEP-03
Outreach ‘Origins, Grids and BOINC - High Performance Computing at NUI Galway’ 26-FEB-03 / 26-FEB-03
Other ‘Big data in modern biology’ 22-APR-13 / 22-APR-13

Other Activities

  Description

(2017) - Reviewer, European Commission Marie Sklodowska-Curie Individual Fellowships (MSCA-IF) 2017 call; (2016) - External PhD Examiner, Institute of Technology Tallaght (2015) - Scientific Reviewer/Consultant, NASA’s Discovery 2014 Program (NNH14ZDA014O). Mission budget per proposal capped at $450M; (2014) - NSF Extreme Science & Engineering Discovery Environment (XSEDE) Campus Champion for Albert Einstein College of Medicine & Yeshiva University; (2014–present) - NASA Postdoctoral Fellowship Review Panel; (2014) - External Reviewer, Annual Review for NASA Maturation of Instruments for Solar System Exploration (MatISSE), MatISSE12-0027, Alian Wang (PI), The Washington University, ‘A Compact Integrated Raman Spectrometer (CIRS)’; (2014) - U.K. Particle Physics and Astronomy Research Council Referee, e-MERLIN Time Allocation Committee; (2014) - Member, New York Genome Center Working Group on Metagenomics & Infectious Diseases; (2013) - Review Panel, National Sciences & Engineering Research Council of Canada Discovery Frontiers: Advancing Big Data Science in Genomics Research; (2013) - Invited Focus Group Member, NSF ’Science Gateway Institute’ Workshop; (2013) - Bioinformatics Standards & Protocols Subcommittee, New York Genome Center; (2013) - Review Panel, NASA NNH13ZDA001N-OSS ROSES 2013: Origins of Solar Systems; (2013) - Review Panel, NASA NNH13ZUA002N: Space Technology Research Opportunities - Early Stage Innovations; (2013) - Review Panel, NASA NESSF13: Earth & Space Science Fellowship; (2013) - Review Panel, NASA NNH12ZDA001N-MATISSE ROSES 2012: Maturation of Instruments for Solar System Exploration; (2012) - External PhD Examiner, University of Cape Town, South Africa; (2011–2015) - Editorial Board, PLoS One; (2013–2015) - Editorial Board, Genomics; (2010) - Expert Evaluator, European Commission Framework Programme 7, FP7-KBBE-2010-3.5.04: Microbial diversity and metagenomic mining for biotechnological innovation; (2010) - U.K. Medical Research Council Molecular and Cellular Medicine Grant Review Board; (2004) - External MSc Examiner, University of Porto, Portugal; (2001 - 2005) Irish Representative, COST Action 283, ‘Computational and Information Infrastructure in the Astronomical Datagrid’; (2000) - U.K. Particle Physics and Astronomy Research Council Referee, MERLIN Time Allocation Committee; (1999) - Journal Referee: Aging Cell, Artificial Intelligence Reviews, Astrobiology, Astronomy and Astrophysics, The Astrophysical Journal, Genome Research, Review of Modern Scientific Instruments, BMC Bioinformatics, BMC Genomics, Bioinformatics, Advances in Space Research, Artificial Intelligence in Medicine, Monthly Notices of the Royal Astronomical Society, PLoS One, BioMed Research International, Future Generation Computer Systems, Applied Soft Computing

Teaching Interests

Whilst based in New York Dr. Golden developed and delivered graduate and senior undergraduate level courses in genomics and in applied data science that involved the use of Jupyter notebooks and the R-studio programming environment, as well as using command line tools to directly interact with high performance and cloud computing resources. Corrections and feedback are easily annotated to handed in notebooks for correction, and the difficulties of software installation and PC suite constraints are significantly reduced. The beauty of the notebooks (either in Python (Jupyter) or R (R-studio)) is that are easily adapted to encourage 'play' based learning around the topic at hand. This is exactly how scientific researchers develop their skills and programming abilities, and so offers students precisely the same means to learn techniques and domain expertise.

Since re-joining the NUIG faculty, Dr. Golden has been tailoring this approach the predominately computational courses that he currently teaches through the School of Mathematics, Statistics and Applied Mathematics. Students are given introductory reading material in advance of each lecture, permitting us to collectively gain traction with the course content almost immediately at the start of each class.




Recent Postgraduate Students

  Graduation Name Degree Primary Supervisor
2008 Paul Geeleher Msc Y
2008 Caoilfhionn Lane PhD Y
2007 James Mac Donald PhD Y
2005 Shaun Mahony PhD
2017 Kevin R. Shieh PhD Y
2014 Pilib Ó Broin PhD Y
2012 Paul Geeleher PhD
2012 Leon K. Harding PhD Y
2012 Stephen Bourke PhD Y
2011 Alan Fergus PhD
2009 Gregg Hallinan PhD Y
2008 Andrew McLellan Msc Y
2004 Padraig O'Connor

Modules Taught

  Term/Year Module Title Module Code Subject / Desc
2017 Programming for Biologists MA5114 Bioinformatics
2017 Introduction to Programming for Biologists MA170 Bioinformatics
2017 Medical Genomics II MA5107 Cancer Genomics
2017 Statistical Computing with R MA5108 Bioinformatics
2017 Computer Science CS102 Programming II/ Hardware
2016 Programming for Biologists MA170 Computational Biology

External Collaborators

  Name Organisation / Institute Country Description of Collaboration
Professor G. Hallinan Caltech U.S.A.
Radio observations of brown dwarfs
Dr. Stephen Bourke Department of Space, Earth and Environment, Onsala Space Observator SWEDEN
Use of LOFAR telescope to study flare stars
Dr. Tom Muxlow Jodrell Bank Observatory UNITED KINGDOM
Radio astronomy of flare stars
Professor J.G. Doyle Armagh Observatory and Planetarium NORTHERN IRELAND
Study of magnetic properties of brown dwarfs.