Dr. Aaron Golden


 
researcher
 

Biography

I am an astronomer & interdisciplinary scientist with over 25 years of computational experience applied to data-driven projects in genomics, earth observation and radiomics. Over this time I have been awarded multiple research grants from national and international funding agencies, and successfully mentored many postgraduate research students and postdoctoral associates in these areas. Such work is inspired by my on-going astronomical research, where necessity is very much the mother of invention when it comes to studying the cosmos, and where up-to-date expertise in the data-intensive sciences is essential. Minor planet 11451 was named 'Aarongolden' by the International Astronomical Union in acknowledgement of my astronomical research. I have been invited to serve as an expert reviewer for NASA, the Canadian National Research Council, the Republic of Portugal's Foundation for Science and Technology and the European Southern Observatory, among other international agencies. Whilst on leave in New York City's Yeshiva University I set up the Department of Mathematical Sciences first graduate courses in Data Science, and pioneered the use of US national cyberinfrastructure resources to support collaborative biomedical & translational clinical research at Yeshiva University's Albert Einstein College of Medicine. In 2021 I was awarded the SFI Innovator Prize for the TAPAS (Tracking Adaptation Progress in Agriculture and Food Security Using an AI-powered Satellite Remote Sensing Platform) project.

Personal website




Research Interests

Stellar/substellar magnetosphere processes; the space weather associated with stellar flares & it's impact on exoplanets; planetary/exoplanetary electrostatic discharges; pulsar astrophysics.

The application of astronomical science methodologies to expedite knowledge discovery in the domains of radiomics, genomics and remote sensing, with a particular interest in the development and use of applied artificial intelligence techniques to that end.



Research Projects

  Project Start Date End Date
SFI 05 RFP CMS0001 AARON GOLDEN 31-JUL-05 31-JAN-09
SFI 07 RFP PHYF553 STTF09 AARON GOLDEN 01-NOV-09 31-DEC-10
INFER - Remote Sensing of Irish Surface Waters 12-MAR-18 11-MAR-21
TRACKING ADAPTATION PROGRESS IN AGRICULTURE AND FOOD SECURITY USING AN AI-POWERED SATELLITE REMOTE SENSING PLATFORM - TAPAS 01-JAN-20 31-DEC-26
GRACE Monitoring of Groundwater over Ireland 01-FEB-19 31-MAR-24
EXPEDITING THE DIAGNOSIS OF COVID-19 IN A CLINICAL SETTING USING AI ENABLED ANALYSIS OF CT SCANS 01-JUN-20 31-MAY-26

Contract Researchers

  Researcher Name Project Role Funding Body
Dúalta Ó Fionnagáin Characterising high speed transient radio emission from planetary electrostatic discharges using the Owens Valley Long Wavelength Array Taking the lead in the study of planetary electrostatic discharges using Caltech's Owens Valley Long Wavelength Array Irish Research Council (IRC)
Yared Tessema TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Agronomy data analytics (2022-2023) Science Foundation Ireland (SFI)
Ross Trearty TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Statistical modeling of biomass production (2023) Science Foundation Ireland (SFI)
Jemima O'Farrell TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Lead, Data Curation & Preparation (2023-) Science Foundation Ireland (SFI)
Dr. Michael Geever GRACE Monitoring Groundwater over Ireland Postdoctoral Fellow Environmental Protection Agency (EPA)
Michael Geever TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Lead on statistical data analytics (2023-) Science Foundation Ireland (SFI)
Dúalta Ó Fionnagáin TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Lead on AI Data analytics (2023-) Science Foundation Ireland (SFI)
Dr. David Rhee International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome Postdoctoral Fellow International
Dr. Gregg Hallinan Investigating pulsed coherent radio emission at the substellarboundary and beyond - are brown dwarfs pulsar analogues? Postdoctoral Fellow Science Foundation Ireland (SFI)
Patricia Codyre TAPAS (Tracking adaptation progress in agriculture and food security using an AI-powered satellite remote sensing platform) Project coordinator/societal impact activities (2022-) Science Foundation Ireland (SFI)

Peer Reviewed Journals

  Year Publication
(2022) 'Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer'
Tosti E., Almeida A.S., Tran T.T.T., Barbachan E. Silva M., Ó Broin P., Dubin R., Chen K., Beck A.P., Mclellan A.S., Vilar E., Golden A., O¿Toole P.W., Edelmann W. (2022) 'Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer'. Cellular and Molecular Gastroenterology and Hepatology, 14 (3):693-717 [DOI] [Details]
(2023) 'Optical Variability, Rotation Period and Inclina- tion Angle of the M9.5 dwarf BRI 0021-0214'
Dulaimi, S., Boyle, R.P., Golden, A., Butler, R.F. (2023) 'Optical Variability, Rotation Period and Inclina- tion Angle of the M9.5 dwarf BRI 0021-0214'. Monthly Notices Of The Royal Astronomical Society, 518 (3):4428-4437 [DOI] [Details]
(2022) 'Exploring breast and prostate cancer RNA-seq derived radiosensitivity with the Genomic Adjusted Radiation Dose (GARD) model'
Nolan B., O'Sullivan B., Golden A., (2022) 'Exploring breast and prostate cancer RNA-seq derived radiosensitivity with the Genomic Adjusted Radiation Dose (GARD) model'. Clinical And Translational Radiation Oncology, 36 :127-131 [DOI] [Details]
(2022) 'Can remote sensing enable a Biomass Climate Adaptation Index for agricultural systems?'
Ferguson, A., Murray, C., Mesfin, Y., McKeown, P., Raymondin, L., Loboguerrero, A., Talsma, T., Allen, B., Jarvis, A., Golden, A., Spillane, C. (2022) 'Can remote sensing enable a Biomass Climate Adaptation Index for agricultural systems?'. Frontiers in Climate, 4:938975 [DOI] [Details]
(2023) 'Teaching graduate research skills in genomics via an integrated `flipped' journal club program'
Aaron Golden (2023) 'Teaching graduate research skills in genomics via an integrated `flipped' journal club program'. Biochemistry And Molecular Biology Education, 51 (1):57-64 [DOI] [Details]
(2022) 'GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal'
King, Lydia and Flaus, Andrew and Coughlan, Simone and Holian, Emma and Golden, Aaron (2022) 'GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal'. HRB Open Research, 5 (8):1-11 [Details]
(2022) 'Coronal Mass Ejections and Type II Radio Emission Variability during a Magnetic Cycle on the Solar-type Star ϵ Eridani'
Ó Fionnagáin, Dúalta and Kavanagh, Robert D. and Vidotto, Aline A. and Jeffers, Sandra V. and Petit, Pascal and Marsden, Stephen and Morin, Julien and Golden, Aaron (2022) 'Coronal Mass Ejections and Type II Radio Emission Variability during a Magnetic Cycle on the Solar-type Star ϵ Eridani'. Astrophysical Journal, 924 (2):115-132 [DOI] [Details]
(2021) 'Survival outcomes are associated with genomic instability in luminal breast cancers'
King, Lydia and Flaus, Andrew and Holian, Emma and Golden, Aaron (2021) 'Survival outcomes are associated with genomic instability in luminal breast cancers'. Plos One, 16 (2) [DOI] [Details]
(2021) 'First results from the REAL-time Transient Acquisition backend (REALTA) at the Irish LOFAR station'
Murphy, PC and Callanan, P and McCauley, J and McKenna, DJ and Fionnag\'ain, D \'O and Louis, CK and Redman, MP and Ca\~nizares, LA and Carley, EP and Maloney, SA and others (2021) 'First results from the REAL-time Transient Acquisition backend (REALTA) at the Irish LOFAR station'. Astronomy & Astrophysics, 655 :A16-A38 [DOI] [Details]
(2020) 'A review of subtidal kelp forests in Ireland: From first descriptions to new habitat monitoring techniques'
Schoenrock, KM;Chan, KM;O'Callaghan, T;O'Callaghan, R;Golden, A;Krueger-Hadfield, SA;Power, AM (2020) 'A review of subtidal kelp forests in Ireland: From first descriptions to new habitat monitoring techniques'. Ecology And Evolution, 10 (13):6819-6832 [DOI] [Details]
(2020) 'Multiepoch VLBI of L Dwarf Binary 2MASS J0746+2000AB: Precise Mass Measurements and Confirmation of Radio Emission from Both Components'
Zhang, QC;Hallinan, G;Brisken, W;Bourke, S;Golden, A (2020) 'Multiepoch VLBI of L Dwarf Binary 2MASS J0746+2000AB: Precise Mass Measurements and Confirmation of Radio Emission from Both Components'. Astrophysical Journal, 897 (11):1-14 [DOI] [Details]
(2020) 'Septin 9 isoforms promote tumorigenesis in mammary epithelial cells by increasing migration and ECM degradation through metalloproteinase secretion at focal adhesions (vol 38, pg 5839, 2019)'
Marcus, J;Bejerano-Sagie, M;Patterson, N;Bagchi, S;Verkhusha, VV;Connolly, D;Goldberg, GL;Golden, A;Sharma, VP;Condeelis, J;Montagna, C (2020) 'Septin 9 isoforms promote tumorigenesis in mammary epithelial cells by increasing migration and ECM degradation through metalloproteinase secretion at focal adhesions (vol 38, pg 5839, 2019)'. Oncogene, 39 :1830-1830 [DOI] [Details]
(2020) 'AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX'
Shieh, KR;Kratschmer, C;Maier, KE;Greally, JM;Levy, M;Golden, A (2020) 'AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX'. Bioinformatics, 36 :2905-2906 [DOI] [Details]
(2020) 'Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion'
Cleynen, I, Engchuan, W, Hestand, MS, Heung, T, Holleman, AM, Johnston, HR, Monfeuga, T, McDonald-McGinn, DM, Gur, RE, Morrow, BE, Swillen, A, Vorstman, JAS, Bearden, CE, Chow, EWC, van den Bree, M, Emanuel, BS, Vermeesch, JR, Warren, ST, Owen, MJ, Chopra, P, Cutler, DJ, Duncan, R, Kotlar, AV, Mulle, JG, Voss, AJ, Zwick, ME, Diacou, A, Golden, A, and others, Bassett, AS (2020) 'Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion'. Molecular Psychiatry, 26 (8):4496-4510 [DOI] [Details]
(2019) 'Septin 9 isoforms promote tumorigenesis in mammary epithelial cells by increasing migration and ECM degradation through metalloproteinase secretion at focal adhesions'
Marcus, J;Bejerano-Sagie, M;Patterson, N;Bagchi, S;Verkhusha, VV;Connolly, D;Goldberg, GL;Golden, A;Sharma, VP;Condeelis, J;Montagna, C (2019) 'Septin 9 isoforms promote tumorigenesis in mammary epithelial cells by increasing migration and ECM degradation through metalloproteinase secretion at focal adhesions'. Oncogene, 38 :5839-5859 [DOI] [Details]
(2018) 'Retraction Notice to: Nested Inversion Polymorphisms Predispose Chromosome 22q11. 2 to Meiotic Rearrangements'
Demaerel, Wolfram and Hestand, Matthew S and Vergaelen, Elfi and Swillen, Ann and L\'opez-S\'anchez, Marcos and P\'erez-Jurado, Luis A and McDonald-McGinn, Donna M and Zackai, Elaine and Emanuel, Beverly S and Morrow, Bernice E and others (2018) 'Retraction Notice to: Nested Inversion Polymorphisms Predispose Chromosome 22q11. 2 to Meiotic Rearrangements'. American Journal Of Human Genetics, 103 (3):457-457 [Details]
(2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'
Pollack, RM,Barzilai, N,Anghel, V,Kulkarni, AS,Golden, A,O'Broin, P,Sinclair, DA,Bonkowski, MS,Coleville, AJ,Powell, D,Kim, S,Moaddel, R,Stein, D,Zhang, KH,Hawkins, M,Crandall, JP (2017) 'Resveratrol Improves Vascular Function and Mitochondrial Number but Not Glucose Metabolism in Older Adults'. Journals Of Gerontology Series A-Biological Sciences And Medical Sciences, 72 :1703-1709 [DOI] [Details]
(2017) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'
Barnicle, A,Seoighe, C,Greally, JM,Golden, A,Egan, LJ (2017) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'. Epigenetics, 12 :591-606 [DOI] [Details]
(2017) 'Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements'
Demaerel, W. and Hestand, M. S. and Vergaelen, E. and Swillen, A. and Lopez-Sanchez, M. and Perez-Jurado, L. A. and McDonald-McGinn, D. M. and Zackai, E. and Emanuel, B. S. and Morrow, B. E. and Breckpot, J. and Devriendt, K. and Vermeesch, J. R. and Antshel, K. and Arango, C. and Armando, M. and Bassett, A. and Bearden, C. and Boot, E. and Bravo-Sanchez, M. and Breetvelt, E. and Busa, T. and Butcher, N. and Campbell, L. and Carmel, M. and Chow, E. and Crowley, T. B. and Cubells, J. and Cutler, D. and Demaerel, W. and Digilio, M. C. and Duijff, S. and Eliez, S. and Emanuel, B. and Epstein, M. and Evers, R. and Fernandez Garcia-Moya, L. and Fiksinski, A. and Fraguas, D. and Fremont, W. and Fritsch, R. and Garcia-Minaur, S. and Golden, A. and Gothelf, D. and Guo, T. and Gur, R. and Gur, R. a (2017) 'Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements'. The American Journal Of Human Genetics, 101 (4):616-622 [Details]
(2016) 'Clinical and molecular significance of microvascular inflammation in transplant kidney biopsies'
Gupta, A. and Ó Broin, P. and Bao, Y. and Pullman, J. and Kamal, L. and Ajaimy, M. and Lubetzky, M. and Colovai, A. and Schwartz, D. and de Boccardo, G. and Golden, A. and Akalin, E. (2016) 'Clinical and molecular significance of microvascular inflammation in transplant kidney biopsies'. Kidney International, 89 (1):217-225 [Details]
(2016) 'Structure and function of neonatal social communication in a genetic mouse model of autism'
Takahashi T;Okabe S;Broin PÓ;Nishi A;Ye K;Beckert MV;Izumi T;Machida A;Kang G;Abe S;Pena JL;Golden A;Kikusui T;Hiroi N; (2016) 'Structure and function of neonatal social communication in a genetic mouse model of autism'. Molecular Psychiatry, 21 (9):1208-1214 [DOI] [Details]
(2016) 'LPA receptor activity is basal specific and coincident with early pregnancy and involution during mammary gland postnatal development'
Acosta, Deanna and Bagchi, Susmita and Broin, Pilib \'O and Hollern, Daniel and Racedo, Silvia E and Morrow, Bernice and Sellers, Rani S and Greally, John M and Golden, Aaron and Andrechek, Eran and others (2016) 'LPA receptor activity is basal specific and coincident with early pregnancy and involution during mammary gland postnatal development'. Scientific Reports, 6 :35810-35827 [DOI] [Details]
(2016) 'Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells'
Barnicle, A,Seoighe, C,Golden, A,Greally, JM,Egan, LJ (2016) 'Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells'. Physiological Genomics, 48 :257-273 [DOI] [Details]
(2016) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'
Barnicle, A,Seoighe, C,Golden, A,Greally, J,Egan, L (2016) 'Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis'. Journal Of Crohns & Colitis, 10 :478-478 [Details]
(2015) 'Clinical, Histological, and Molecular Markers Associated With Allograft Loss in Transplant Glomerulopathy Patients'
Kamal, Layla and Ó Broin, Pilib and Bao, Yi and Ajaimy, Maria and Lubetzky, Michelle and Gupta, Anjali and de Boccardo, Graciela and Pullman, James and Golden, Aaron and Akalin, Enver (2015) 'Clinical, Histological, and Molecular Markers Associated With Allograft Loss in Transplant Glomerulopathy Patients'. Transplantation, 99 (9):1912-1918 [Details]
(2015) 'RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships'
Nadel, J,Athanasiadou, R,Lemetre, C,Wijetunga, NA,Broin, PO,Sato, H,Zhang, ZD,Jeddeloh, J,Montagna, C,Golden, A,Seoighe, C,Greally, JM (2015) 'RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships'. Epigenetics & Chromatin, 8 (46):1-19 [DOI] [Details]
(2015) 'toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research'
Rhee, David B and Croken, Matthew McKnight and Shieh, Kevin R and Sullivan, Julie and Micklem, Gos and Kim, Kami and Golden, Aaron (2015) 'toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research'. Database-The Journal Of Biological Databases And Curation, 2015 (1):1-12 [DOI] [Details]
(2015) 'Development of a targeted multi-disorder high-throughput sequencing assay for the effective identification of disease-causing variants'
Delio, Maria and Patel, Kunjan and Maslov, Alex and Marion, Robert W and McDonald, Thomas V and Cadoff, Evan M and Golden, Aaron and Greally, John M and Vijg, Jan and Morrow, Bernice and others (2015) 'Development of a targeted multi-disorder high-throughput sequencing assay for the effective identification of disease-causing variants'. Plos One, 10 (7 (e0133742)):1-18 [Details]
(2015) 'Intestinal Microbiota-Derived Metabolomic Blood Plasma Markers for Prior Radiation Injury'
Ó Broin, Pilib and Vaitheesvaran, Bhavapriya and Saha, Subhrajit and Hartil, Kirsten and Chen, Emily I and Goldman, Devorah and Fleming, William Harv and Kurland, Irwin J and Guha, Chandan and Golden, Aaron (2015) 'Intestinal Microbiota-Derived Metabolomic Blood Plasma Markers for Prior Radiation Injury'. International Journal Of Radiation Oncology Biology Physics, 91 (2):360-367 [Details]
(2015) 'Magnetospherically driven optical and radio aurorae at the end of the stellar main sequence'
Hallinan, G,Littlefair, SP,Cotter, G,Bourke, S,Harding, LK,Pineda, JS,Butler, RP,Golden, A,Basri, G,Doyle, JG,Kao, MM,Berdyugina, SV,Kuznetsov, A,Rupen, MP,Antonova, A (2015) 'Magnetospherically driven optical and radio aurorae at the end of the stellar main sequence'. Nature, 523 (7562):568-571 [DOI] [Details]
(2015) 'Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach'
Ó Broin, Pilib and Smith, Terry J and Golden, Aaron AJ (2015) 'Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach'. BMC Bioinformatics, 16 (1):22-34 [DOI] [Details]
(2015) 'Deregulation of the Ras-Erk signaling axis modulates the enhancer landscape'
Nabet, Behnam and Broin, Pilib \'O and Reyes, Jaime M and Shieh, Kevin and Lin, Charles Y and Will, Christine M and Popovic, Relja and Ezponda, Teresa and Bradner, James E and Golden, Aaron A and others (2015) 'Deregulation of the Ras-Erk signaling axis modulates the enhancer landscape'. Cell reports, 12 (8):1300-1313 [Details]
(2015) 'Integrative metabolic signatures for hepatic radiation injury'
Kurland, Irwin Jack and Broin, Pilib \'O and Golden, Aaron and Su, Gang and Meng, Fan and Liu, Laibin and Mohney, Robert and Kulkarni, Shilpa and Guha, Chandan (2015) 'Integrative metabolic signatures for hepatic radiation injury'. Plos One, 10 (6 (e0124795)):1-27 [DOI] [Details]
(2014) 'The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences'
Wijetunga, N Ari and Delahaye, Fabien and Zhao, Yong M and Golden, Aaron and Mar, Jessica C and Einstein, Francine H and Greally, John M (2014) 'The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences'. Nature communications, 5 (1):1-9 [Details]
(2014) 'Increased intragraft rejection--associated gene transcripts in patients with donor-specific antibodies and normal biopsies'
Hayde, Nicole and Ó Broin, Pilib and Bao, Yi and de Boccardo, Graciela and Lubetzky, Michelle and Ajaimy, Maria and Pullman, James and Colovai, Adriana and Golden, Aaron and Akalin, Enver (2014) 'Increased intragraft rejection--associated gene transcripts in patients with donor-specific antibodies and normal biopsies'. Kidney International, 86 (3):600-609 [DOI] [Details]
(2014) 'Genomics of BK viremia in kidney transplant recipients'
Lubetzky, Michelle and Bao, Yi and Ó Broin, Pilib and Marfo, Kwaku and Ajaimy, Maria and Aljanabi, Aws and de Boccardo, Graciela and Golden, Aaron and Akalin, Enver (2014) 'Genomics of BK viremia in kidney transplant recipients'. Transplantation, 97 (4):451-456 [Details]
(2014) 'A pathogenesis-based transcript signature in donor-specific antibody-positive kidney transplant patients with normal biopsies'
Ó Broin, P and Hayde, N and Bao, Y and Ye, B and Calder, RB and de Boccardo, G and Lubetzky, M and Ajaimy, M and Pullman, J and Colovai, A and others (2014) 'A pathogenesis-based transcript signature in donor-specific antibody-positive kidney transplant patients with normal biopsies'. Genomics Data, 2 :357-360 [Details]
(2014) 'Role of the tumor suppressor IQGAP2 in metabolic homeostasis: possible link between diabetes and cancer'
Vaitheesvaran, B and Hartil, K and Navare, A and Zheng, C and Ó Broin, P and Golden, A and Guha, C and Lee, WN and Kurland, IJ and Bruce, JE (2014) 'Role of the tumor suppressor IQGAP2 in metabolic homeostasis: possible link between diabetes and cancer'. Metabolomics, 10 (5):920-937 [DOI] [Details]
(2013) 'Astrogenomics: big data, old problems, old solutions?'
Golden, Aaron and Djorgovski, S George and Greally, John M (2013) 'Astrogenomics: big data, old problems, old solutions?'. Genome Biology, 14 (129):1-4 [DOI] [Details]
(2013) 'Periodic optical variability of radio-detected ultracool dwarfs'
Harding, Leon K and Hallinan, Gregg and Boyle, Richard P and Golden, Aaron and Singh, Navtej and Sheehan, Brendan and Zavala, Robert T and Butler, Ray F (2013) 'Periodic optical variability of radio-detected ultracool dwarfs'. Astrophysical Journal, 779 (101):1-21 [DOI] [Details]
(2013) 'Translating the TCGA breast cancer results into clinical practice: searching for therapeutic clues'
Sparano, Joseph A and Golden, Aaron AJ and Montagna, Cristina (2013) 'Translating the TCGA breast cancer results into clinical practice: searching for therapeutic clues'. Oncology, 27 (12):1284-1284 [Details]
(2013) 'AIPSLite: ParselTongue extension for distributed AIPS processing'
Bourke, S., van Langevelde, H.J., Torstensson K. and Golden, A. (2013) 'AIPSLite: ParselTongue extension for distributed AIPS processing'. Experimental Astronomy, 36 (1-2):59-76 [Details]
(2013) 'Volume-limited radio survey of ultracool dwarfs'
Antonova, A,Hallinan, G,Doyle, JG,Yu, S,Kuznetsov, A,Metodieva, Y,Golden, A,Cruz, KL (2013) 'Volume-limited radio survey of ultracool dwarfs'. Astronomy & Astrophysics, 549 [DOI] [Details]
(2013) 'Spin-orbit alignment in the very low mass binary regime The L dwarf tight binary 2MASSW J0746425+200032AB'
Harding, LK,Hallinan, G,Konopacky, QM,Kratter, KM,Boyle, RP,Butler, RF,Golden, A (2013) 'Spin-orbit alignment in the very low mass binary regime The L dwarf tight binary 2MASSW J0746425+200032AB'. Astronomy & Astrophysics, 554 [DOI] [Details]
(2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'
Geeleher, P,Hartnett, L,Egan, LJ,Golden, A,Ali, RAR,Seoighe, C (2013) 'Gene-set analysis is severely biased when applied to genome-wide methylation data'. Bioinformatics, 29 :1851-1857 [DOI] [Details]
(2013) 'An AIPS-based, distributed processing method for large radio interferometric datasets'
Bourke, S,van Langevelde, HJ,Torstensson, K,Golden, A (2013) 'An AIPS-based, distributed processing method for large radio interferometric datasets'. Experimental Astronomy, 36 :59-76 [DOI] [Details]
(2012) 'The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE'
Golden, A. and McLellan, A. S. and Dubin, R. A. and Jing, Q. and O Broin, P. and Moskowitz, D. and Zhang, Z. and Suzuki, M. and Hargitai, J. and Calder, R. B. and Greally, J. M. (2012) 'The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE'. Stud Health Technol Inform, 175 :182-191 [Details]
(2012) 'The regulatory effect of miRNAs is a heritable genetic trait in humans'
Geeleher, P;Huang, RS;Gamazon, ER;Golden, A;Seoighe, C (2012) 'The regulatory effect of miRNAs is a heritable genetic trait in humans'. BMC Genomics, 13 (363):1-10 [DOI] [Details]
(2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'
McLellan, Andrew S and Dubin, Robert A and Jing, Qiang and Ó Broin, Pilib and Moskowitz, David and Suzuki, Masako and Calder, R Brent and Hargitai, Joseph and Golden, Aaron and Greally, John M (2012) 'The Wasp System: an open source environment for managing and analyzing genomic data'. Genomics, 100 (6):345-351 [Details]
(2012) 'Looking for a pulse: A search for rotationally modulated radio emission from the Hot Jupiter, Tau Bootis b'
Hallinan, G and Sirothia, SK and Antonova, A and Ishwara-Chandra, CH and Bourke, S and Doyle, JG and Hartman, J and Golden, A (2012) 'Looking for a pulse: A search for rotationally modulated radio emission from the Hot Jupiter, Tau Bootis b'. Astrophysical Journal, 762 (1 (34)):1-4 [DOI] [Details]
(2012) 'Comparative Analysis of Two Formation Scenarios of Bursty Radio Emission from Ultracool Dwarfs'
Kuznetsov, A. A. ; Doyle, J. G. ; Yu, S. ; Hallinan, G. ; Antonova, A.; Golden, A. (2012) 'Comparative Analysis of Two Formation Scenarios of Bursty Radio Emission from Ultracool Dwarfs'. Astrophysical Journal, 746 (1 (99)):1-8 [DOI] [Details]
(2012) 'Electron-beam-induced radio emission from ultracool dwarfs'
Yu, S and Doyle, JG and Kuznetsov, A and Hallinan, G and Antonova, A and MacKinnon, AL and Golden, A (2012) 'Electron-beam-induced radio emission from ultracool dwarfs'. Astrophysical Journal, 752 (1 (60)):1-17 [DOI] [Details]
(2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'
Thomas, Brandon J and Rubio, Eric D and Krumm, Niklas and Ó Broin, Pilib and Bomsztyk, Karol and Welcsh, Piri and Greally, John M and Golden, Aaron A and Krumm, Anton (2011) 'Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene'. Epigenetics & Chromatin, 4 (14):1-16 [DOI] [Details]
(2011) 'Inverse mapping of polarized optical emission from pulsars: basic formulation and determination of emission altitude'
Mc Donald, J and O’Connor, P and de Burca, Dairmaid and Golden, Aaron and Shearer, Andy (2011) 'Inverse mapping of polarized optical emission from pulsars: basic formulation and determination of emission altitude'. Monthly Notices of the Royal Astronomical Society, 417 (1):730-744 [Details]
(2010) 'Modelling the radio pulses of an ultracool dwarf'
Yu, S and Hallinan, G and Doyle, JG and MacKinnon, AL and Antonova, A and Kuznetsov, A and Golden, A and Zhang, ZH (2010) 'Modelling the radio pulses of an ultracool dwarf'. Astronomy & Astrophysics, 525 (A39):1-10 [DOI] [Details]
(2010) 'Phase connecting multi-epoch radio data for the ultracool dwarf TVLM 513-46546'
Doyle, JG and Antonova, A and Marsh, MS and Hallinan, G and Yu, S and Golden, A (2010) 'Phase connecting multi-epoch radio data for the ultracool dwarf TVLM 513-46546'. Astronomy & Astrophysics, 524 (A15):1-5 [DOI] [Details]
(2010) 'Multi-frequency long-term monitoring of the ultracool dwarf TVLM 513-46546'
Antonova, Antoaneta and Doyle, John Gerard and Hallinan, Gregg and Golden, Aaron and Bourke, Stephen (2010) 'Multi-frequency long-term monitoring of the ultracool dwarf TVLM 513-46546'. Bulgarian Astronomical Journal, 14 :58-64 [Details]
(2010) 'Investigating Magnetic Field Strengths and Topologies for Pulsing Ultracool Dwarfs: The M8. 5 Dwarf TVLM 513-46546'
Antonova, A and Hallinan, G and Doyle, JG and Golden, A (2010) 'Investigating Magnetic Field Strengths and Topologies for Pulsing Ultracool Dwarfs: The M8. 5 Dwarf TVLM 513-46546'. Publications de l'Observatoire Astronomique de Beograd, 90 :117-120 [Details]
(2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'
Geeleher, P. and Morris, D. and Hinde, J. P. and Golden, A. (2009) 'BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server'. Bioinformatics, 25 (11):1438-1439 [Details]
(2009) 'Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation'
Donald, James Mc and Golden, Aaron and Jennings, S. Gerard (2009) 'Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation'. International Journal of High Performance Computing Applications, 23 (1):42-61 [DOI] [Details]
(2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'
Kim, Marianne K.-H. and McGarry, Thomas J. and \'O Broin, Pilib and Flatow, Jared M. and Golden, Aaron A.-J. and Licht, J onathan D. (2009) 'An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1'. Proceedings of the National Academy of Sciences, 106 (27):11154-11159 [DOI] [Details]
(2008) 'Simultaneous absolute timing of the Crab pulsar at radio and optical wavelengths'
Oosterbroek, T and Cognard, I and Golden, A and Verhoeve, P and Martin, DDE and Erd, C and Schulz, R and St\"uwe, JA and Stankov, A and Ho, T (2008) 'Simultaneous absolute timing of the Crab pulsar at radio and optical wavelengths'. Astronomy & Astrophysics, 488 (1):271-277 [Details]
(2008) 'A mini-survey of ultracool dwarfs at 4.9 GHz'
Antonova, A and Doyle, JG and Hallinan, G and Bourke, S and Golden, A (2008) 'A mini-survey of ultracool dwarfs at 4.9 GHz'. Astronomy & Astrophysics, 487 (1):317-322 [Details]
(2008) 'Confirmation of the electron cyclotron maser instability as the dominant source of radio emission from very low mass stars and brown dwarfs'
Hallinan, G,Antonova, A,Doyle, JG,Bourke, S,Lane, C,Golden, A (2008) 'Confirmation of the electron cyclotron maser instability as the dominant source of radio emission from very low mass stars and brown dwarfs'. Astrophysical Journal, 684 :644-653 [Details]
(2007) 'CG dinucleotide clustering is a species-specific property of the genome'
Glass, JL,Thompson, RF,Khulan, B,Figueroa, ME,Olivier, EN,Oakley, EJ,Van Zant, G,Bouhassira, EE,Melnick, A,Golden, A,Fazzari, MJ,Greally, JM (2007) 'CG dinucleotide clustering is a species-specific property of the genome'. Nucleic Acids Research, 35 :6798-6807 [DOI] [Details]
(2007) 'Periodic bursts of coherent radio emission from an ultracool dwarf'
Hallinan, G,Bourke, S,Lane, C,Antonova, A,Zavala, RT,Brisken, WF,Boyle, RP,Vrba, FJ,Doyle, JG,Golden, A (2007) 'Periodic bursts of coherent radio emission from an ultracool dwarf'. Astrophysical Journal, 663 :25-28 [Details]
(2007) 'Sporadic long-term variability in radio activity from a brown dwarf'
Antonova, A and Doyle, JG and Hallinan, G and Golden, A and Koen, C (2007) 'Sporadic long-term variability in radio activity from a brown dwarf'. Astronomy & Astrophysics, 472 (1):257-260 [Details]
(2007) 'Pulsating coherent radio emission from ultracool dwarfs'
Hallinan, G and Lane, C and Bourke, S and Antonova, A and Zavala, RT and Brisken, WF and Boyle, RP and Vrba, FJ and Golden, A (2007) 'Pulsating coherent radio emission from ultracool dwarfs'. Memorie della Società Astronomica Italiana, 78 (2):304-307 [Details]
(2007) 'Rotational modulation of M/L dwarfs due to magnetic spots'
Lane, C;Hallinan, G;Zavala, RT;Butler, RF;Boyle, RP;Bourke, S;Antonova, A;Doyle, JG;Vrba, FJ;Golden, A (2007) 'Rotational modulation of M/L dwarfs due to magnetic spots'. Astrophysical Journal, 668 :163-166 [Details]
(2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'
Mahony, S,Benos, PV,Smith, TJ,Golden, A (2006) 'Self-organizing neural networks to support the discovery of DNA-binding motifs'. Neural Networks, 19 :950-962 [DOI] [Details]
(2006) 'Rotational modulation of the radio emission from the M9 dwarf TVLM 513-46546: Broadband coherent emission at the substellar boundary?'
Hallinan, G,Antonova, A,Doyle, JG,Bourke, S,Brisken, WF,Golden, A (2006) 'Rotational modulation of the radio emission from the M9 dwarf TVLM 513-46546: Broadband coherent emission at the substellar boundary?'. Astrophysical Journal, 653 :690-699 [Details]
(2005) 'MERLIN Observations of PSR B1951+ 32 and its associated plerion'
Bourke, S and Clyne, G and Brisken, WF and Muxlow, TWB and Golden, A (2005) 'MERLIN Observations of PSR B1951+ 32 and its associated plerion'. Memorie della Società Astronomica Italiana, 76 (3):580-583 [Details]
(2005) 'Synchrotron self-absorption in pulsar magnetospheres: Implications for optical emission'
O'Connor, P;Golden, A;Shearer, A (2005) 'Synchrotron self-absorption in pulsar magnetospheres: Implications for optical emission'. Astrophysical Journal, 631 :471-479 [Details]
(2005) 'Transcription factor binding site identification using the self-organizing map'
Mahony, S,Hendrix, D,Golden, A,Smith, TJ,Rokhsar, DS (2005) 'Transcription factor binding site identification using the self-organizing map'. Bioinformatics, 21 :1807-1814 [DOI] [Details]
(2005) 'Self-organizing maps of position weight matrices for motif discovery in biological sequences'
Mahony, S,Hendrix, D,Smith, TJ,Golden, A (2005) 'Self-organizing maps of position weight matrices for motif discovery in biological sequences'. Artificial Intelligence Review, 24 :397-413 [DOI] [Details]
(2005) 'Improved detection of DNA motifs using a self-organized clustering of familial binding profiles'
Mahony, S,Golden, A,Smith, TJ,Benos, PV (2005) 'Improved detection of DNA motifs using a self-organized clustering of familial binding profiles'. Bioinformatics, 21 :283-291 [DOI] [Details]
(2005) 'A MERLIN observation of PSR B1951+32 and its associated plerion'
Golden, A,Bourke, S,Clyne, G,Butler, RF,Shearer, A,Muxlow, TWB,Brisken, WF (2005) 'A MERLIN observation of PSR B1951+32 and its associated plerion'. Astrophysical Journal, 635 :153-156 [Details]
(2004) 'FAVOR (FAst Variability Optical Registration)-two-telescope complex for detection and investigation of short optical transients'
Karpov, S and Bad'in, D and Beskin, G and Biryukov, A and Bondar, S and Chuntonov, G and Debur, V and Ivanov, E and Katkova, E and Plokhotnichenko, V and others (2004) 'FAVOR (FAst Variability Optical Registration)-two-telescope complex for detection and investigation of short optical transients'. Astronomische Nachrichten, 325 (6-8) [Details]
(2004) 'Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models'
Mahony, S,McInerney, JO,Smith, TJ,Golden, A (2004) 'Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models'. BMC Bioinformatics, 5 (23):1-9 [DOI] [ARAN Link] [Details]
(2003) 'Pulsar PSR B0656+14, the monogem ring, and the origin of the knee in the primary cosmic-ray spectrum'
Thorsett, SE,Benjamin, RA,Brisken, WF,Golden, A,Goss, WM (2003) 'Pulsar PSR B0656+14, the monogem ring, and the origin of the knee in the primary cosmic-ray spectrum'. Astrophysical Journal, 592 :71-73 [Details]
(2003) 'Enhanced optical emission during Crab giant radio pulses'
Shearer, A;Stappers, B;O'Connor, P;Golden, A;Strom, R;Redfern, M;Ryan, O (2003) 'Enhanced optical emission during Crab giant radio pulses'. Science, 301 :493-495 [Details]
(2003) 'The distance and radius of the neutron star PSR B0656+14'
Brisken, WF;Thorsett, SE;Golden, A;Goss, WM (2003) 'The distance and radius of the neutron star PSR B0656+14'. Astrophysical Journal, 593 :89-92 [Details]
(2002) 'Detection of new optical counterpart candidates to PSR B1951+ 32 with HST/WFPC2'
Butler, Ray F and Golden, A and Shearer, A (2002) 'Detection of new optical counterpart candidates to PSR B1951+ 32 with HST/WFPC2'. Astronomy & Astrophysics, 395 (3):845-851 [Details]
(2002) 'European collaboration towards the Astronomical DataGrid'
Golev, V and Tsvetkov, M and Murtagh, F and Egret, D and Longo, G and di Gesu, V and Allen, G and Holl, A and Shearer, A and Golden, A and others (2002) 'European collaboration towards the Astronomical DataGrid'. Publications de l'Observatoire Astronomique de Beograd, 73 :37-48 [Details]
(2001) 'A search for the optical counterpart to PSR B1821-24 in M 28'
Golden, A,Butler, RF,Shearer, A (2001) 'A search for the optical counterpart to PSR B1821-24 in M 28'. Astronomy & Astrophysics, 371 :198-204 [Details]
(2001) 'Implications of the optical observations of isolated neutron stars'
Shearer, A;Golden, A (2001) 'Implications of the optical observations of isolated neutron stars'. Astrophysical Journal, 547 :967-972 [Details]
(2000) 'Extreme Ultraviolet Explorer observations of PSR B0656+14'
Edelstein, J,Seon, KI,Golden, A,Min, KW (2000) 'Extreme Ultraviolet Explorer observations of PSR B0656+14'. Astrophysical Journal, 539 :902-907 [Details]
(2000) 'Unpulsed optical emission from the crab pulsar'
Golden, A;Shearer, A;Beskin, GM (2000) 'Unpulsed optical emission from the crab pulsar'. Astrophysical Journal, 535 :373-378 [Details]
(2000) 'High speed phase-resolved 2-d UBV photometry of the Crab pulsar'
Golden, A;Shearer, A;Redfern, RM;Beskin, GM;Neizvestny, SI;Neustroev, VV;Plokhotnichenko, VL;Cullum, M (2000) 'High speed phase-resolved 2-d UBV photometry of the Crab pulsar'. Astronomy & Astrophysics, 363 :617-628 [Details]
(1999) 'Phase-Resolved Optical Emission from Isolated Neutron Stars'
Shearer, A and Golden, A and O'Conner, P and Beskin, G and Redfern, M (1999) 'Phase-Resolved Optical Emission from Isolated Neutron Stars'. Irish Astronomical Journal, 26 (2):99-104 [Details]
(1999) 'Radius and distance estimates of the isolated neutron stars Geminga and PSR B0656+14 using optical photometry'
Golden, A,Shearer, A (1999) 'Radius and distance estimates of the isolated neutron stars Geminga and PSR B0656+14 using optical photometry'. Astronomy & Astrophysics, 342 :5-8 [Details]
(1998) 'Possible pulsed optical emission from Geminga'
Shearer, A,Golden, A,Harfst, S,Butler, R,Redfern, RM,O'Sullivan, CMM,Neustroev, VV,Plokhotnichenko, VL,Cullum, M,Danks, A (1998) 'Possible pulsed optical emission from Geminga'. Astronomy & Astrophysics, 335 :21-24 [Details]
(1998) 'Time-resolved optical observations of PSR 1509-58'
Shearer, A,O'Sullivan, CMM,Golden, A,Garcia, PVR,Redfern, M,Danks, A,Cullum, M (1998) 'Time-resolved optical observations of PSR 1509-58'. Astronomy & Astrophysics, 333 :16-18 [Details]
(1998) 'A search for the optical counterpart of PSR B1951+32 in the supernova remnant CTB 80'
O'Sullivan, C;Shearer, A;Colhoun, M;Golden, A;Redfern, M;Butler, R;Beskin, GM;Neizvestny, SI;Neustroev, VV;Plokhotnichenko, VL;Danks, A (1998) 'A search for the optical counterpart of PSR B1951+32 in the supernova remnant CTB 80'. Astronomy & Astrophysics, 335 :991-994 [Details]
(1997) 'Pulsed optical emission from PSR 0656+141'
Shearer, A,Redfern, RM,Gorman, G,Butler, R,Golden, A,OKane, P,Beskin, GM,Neizvestny, SI,Neustroev, VV,Plokhotnichenko, VL,Cullum, M (1997) 'Pulsed optical emission from PSR 0656+141'. Astrophysical Journal, 487 :181-185 [Details]

Published Reports

  Year Publication
(2022) Research 413: The Diversity and Resilience of Kelp Ecosystems in Ireland.
Schoenrock, K., Krueger-Hadfield, S., Chan, K., O¿Callaghan, R., O¿Callaghan, T., Golden, A., Power, A. (2022) Research 413: The Diversity and Resilience of Kelp Ecosystems in Ireland. Environmental Protection Agebcy, Dublin. [Details]
(2021) Research 387: GRACE Monitoring of Groundwater over Ireland - A Feasibility Study.
Michael Geever, Eve Daly and Aaron Golden (2021) Research 387: GRACE Monitoring of Groundwater over Ireland - A Feasibility Study. Environmental Protection Agency, Dublin. [Details]

Conference Publications

  Year Publication
(2020) NeurIPS 2020 Workshop on Tackling Climate Change with Machine Learning
Coca-Castro, Alejandro and Golden, Aaron and Reymondin, Louis (2020) A Multi-source, End-to-End Solution for Tracking Climate Change Adaptation in Agriculture NeurIPS 2020 Workshop on Tackling Climate Change with Machine Learning Online, , 11-DEC-20 - 11-DEC-20 , pp.89 (1)-89 (5) [Details]
(2016) 2016 IEEE Tenth International Conference on Semantic Computing (ICSC)
Rhee, David and Shieh, Kevin and Sullivan, Julie and Micklem, Gos and Kim, Kami and Golden, Aaron (2016) Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies . In: Tao Li, et al eds. 2016 IEEE Tenth International Conference on Semantic Computing (ICSC) Laguna Hills, CA, , 04-FEB-16 - 06-FEB-16 , pp.314-320 [Details]
(2014) Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment
Shieh, Kevin and Ó Broin, Pilib and Rhee, David and Levy, Matthew and Golden, Aaron (2014) Using SAGA and the Open Science Grid to Search for Aptamers . In: Lathrop, S. and Alameda, J eds. Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment Atlanta, GA, , 13-JUL-14 - 18-JUL-14 , pp.27(1)-27(4) [Details]
(2013) Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery
Rhee, David and Hargitai, Joseph and Calder, R Brent and Broin, Pilib \'O and Shieh, Kevin and Golden, Aaron (2013) 'Spring through the gateway': deploying genomic workflows with XSEDE . In: Nancy Wilkins-Diehr eds. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery San Diego, CA, , 22-JUL-13 - 25-JUL-13 , pp.30 (1)-30 (4) [Details]
(2011) 16th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun
Harding, Leon K and Hallinan, Gregg and Boyle, Richard P and Butler, Ray F and Sheehan, Brendan and Golden, Aaron (2011) A Search for Periodic Optical Variability in Radio Detected Ultracool Dwarfs: A Consequence of a Magnetically-Driven Auroral Process? . In: Johns-Krull, Christopher eds. 16th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun Seattle, WA, , 28-AUG-10 - 02-SEP-08 , pp.219-227 [Details]
(2009) 15th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun
Hallinan, Gregg and Doyle, Gerry and Antonova, Antoaneta and Bourke, Stephen and Jardine, Moira and Donati, J-F and Morin, Julien and Golden, Aaron (2009) Mapping the Radio Coronae of Cool Stars and Brown Dwarfs . In: Stempels eds. 15th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun St. Andrews, Scotland, , 21-JUL-08 - 25-JUL-08 , pp.146-151 [Details]
(2007) GCCB'06: Proceedings of the 2006 international conference on Distributed, high-performance and grid computing in computational biology
McCoy, Nigel and Mahony, Shaun and Golden, Aaron (2007) Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques GCCB'06: Proceedings of the 2006 international conference on Distributed, high-performance and grid computing in computational biology Eilat, Israel, , 21-JAN-07 - 21-JAN-07 , pp.99-109 [Details]
(2006) Astronomical Data Analysis Software and Systems XV
Cunniffe, J and Golden, A and Simon, G (2006) Self-Consistent Data Quality Recovery-A Study of the DENIS Photometric Calibration Archive . In: C. Gabriel, C. Arviset, D. Ponz and E. Solano eds. Astronomical Data Analysis Software and Systems XV San Lorenzo de El Escorial, Spain, , 02-OCT-05 - 05-OCT-05 , pp.585-586 [Details]
(2006) 8th European VLBI Network Symposium
Bourke, Stephen and van Langevelde, HJ and Harvey-Smith, L and Golden, A (2006) Analysing very large datasets with ParselTongue . In: Andrzej Marecki et al eds. 8th European VLBI Network Symposium Torun, Poland, , 26-SEP-06 - 29-SEP-06 , pp.66-68 [Details]
(2005) SPIE Opto-Ireland 2005: Imaging and Vision
Kieran P. Forde ; Raymond F. Butler ; David Peat ; Aaron Golden ; Seathrun O'Tuairisg (2005) Spectrophotometry: imaging with custom narrow-band filters and an automated data-reduction pipeline . In: Fionn D. Murtagh eds. SPIE Opto-Ireland 2005: Imaging and Vision Dublin, Ireland, , 05-APR-05 - 06-APR-05 , pp.216-224 [Details]
(2005) Future Directions in High Resolution Astronomy: The 10th Anniversary of the VLBA
Gabuzda, D and Golden, A (2005) ARTI--A Radio Telescope for Ireland Future Directions in High Resolution Astronomy: The 10th Anniversary of the VLBA Socorro NM, , 08-JUN-03 - 12-JUN-03 , pp.566-568 [Details]
(2005) 7th International School/Symposium for Space Simulations
Clyne, G and Golden, A and Bourke, S (2005) Current Work on a Magnetohydrodynamic Code To Model Pulsar Wind Interactions: The Particular Case of CTB80 7th International School/Symposium for Space Simulations Kyoto, Japan, , 26-MAR-05 - 31-MAR-15 , pp.26-31 [Details]
(2005) 7th International School/Symposium for Space Simulations
Mc Donald, James and Golden, Aaron and Jennings, S Gerard (2005) GRID-FDA: A new breed of DDA? 7th International School/Symposium for Space Simulations Kyoto, Japan, , 26-MAR-05 - 31-MAR-05 , pp.26-31 [Details]
(2005) 7th International School/Symposium for Space Simulations
Hallinan, Gregg and Golden, Aaron (2005) Development of a Parallel Fully Relativistic 3-Dimensional Particle-in-Cell Model of Electron Cyclotron Maser Emission from Brown Dwarfs 7th International School/Symposium for Space Simulations Kyoto, Japan, , 26-MAR-05 - 31-MAR-05 , pp.26-31 [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Ó Tuairisg, S and Butler, Ray and Golden, Aaron and Shearer, Andrew and Voisin, Bruno and Micol, Alberto (2004) Automated reduction and analysis of images from multiple data archives . In: Ochsenbein,F.; Allen,G., ASP Conf Series 314 eds. Astronomical Data Analysis Software and Systems (ADASS) XIII [Details]
(2004) Bioastronomy 2002: Life Among The Stars
Demorest, P;Werthimer, D;Anderson, D;Golden, A;Ekers, R (2004) A new search for mus time scale radio pulses . In: Norris, R and Stootman, F eds. Bioastronomy 2002: Life Among The Stars Hamilton Island, Great Barrier Reef, Australia, 8-12 July 2002, , 08-JUL-02 - 12-JUL-02 , pp.479-482 [Details]
(2004) SPIE Astronomical Telescopes+ Instrumentation
Voisin, Bruno and Micol, Alberto and O'Tuairisg, Seathrun and Butler, Raymond F and Golden, Aaron and Shearer, Andrew (2004) Simulating instruments for mining uncalibrated archives . In: Quinn,P.J.; Bridger,A.; Proc SPIE Optimizing Scientific Return for Astronomy through Informatio eds. SPIE Astronomical Telescopes+ Instrumentation Glasgow, Scotland, , 21-JUN-04 - 25-JUN-04 , pp.294-301 [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Voisin, Bruno and Micol, A and O'Tuairisg, S and Butler, R and Golden, A and Shearer, A (2004) Using a Reversed Exposure Time Calculator for Querying Uncalibrated Archives . In: F. Ochsenbein, M. Allen, and D. Egret eds. Astronomical Data Analysis Software and Systems (ADASS) XIII Strasbourg, France, , 12-OCT-03 - 15-OCT-03 , pp.125-128 [Details]
(2004) SPIE Astronomical Telescopes+ Instrumentation
O'Tuairisg, Seathrun and Golden, Aaron and Butler, Raymond F and Shearer, Andrew and Voisin, Bruno (2004) A pipeline for automatically processing and analyzing archival images from multiple instruments SPIE Astronomical Telescopes+ Instrumentation , pp.467-473 [Details]
(2004) Toward an International Virtual Observatory
Murtagh, F. ; Egret, D. ; Longo, G. ; di Gesu, V. ; Allen, G. ; Nunez, J. ; Molina, R. ; Llorente, I. ; Shearer, A. ; Golden, A. ; Butler, R. ; Holl, A. ; Tsvetkov, M. ; Boyd, D. ; Sastry, L. ; Golev, V. ; Jetzer, P. ; Csillaghy, A. (2004) iAstro: Computational and Information Infrastructure in the Astronomical DataGrid . In: Peter J. Quinn, Krzysztof M. Górski eds. Toward an International Virtual Observatory Garching, Germany, , 10-JUN-02 - 14-JUN-02 , pp.296-297 [Details]
(2004) Astronomical Data Analysis Software and Systems (ADASS) XIII
Cunniffe, John and Meurs, Evert JA and Golden, Aaron (2004) Efficient data mining in the X-ray sky background . In: F. Ochsenbein, M. Allen, and D. Egret, eds eds. Astronomical Data Analysis Software and Systems (ADASS) XIII Strasbourg, France, , 12-OCT-03 - 15-OCT-03 , pp.812-815 [Details]
(2003) Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003
Mahony, Shaun and Smith, Terry J and Mclnerney, JO and Golden, Aaron (2003) A new approach to gene prediction using the self-organizing map . In: IEEE eds. Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003 Stanford, CA, , 11-AUG-03 - 14-AUG-03 , pp.444-445 [Details]
(2003) Opto-Ireland 2002: Optical Metrology, Imaging, and Machine Vision
Butler, Raymond F and O'Tuairisg, Seathrun and Shearer, Andrew and Golden, Aaron (2003) Image PSF-matching and subtraction: a powerful astronomical technique and its application to industrial imaging . In: Thacker, N.A. et al eds. Opto-Ireland 2002: Optical Metrology, Imaging, and Machine Vision Galway, Ireland, , 05-SEP-02 - 06-SEP-02 , pp.201-212 [Details]
(2003) Proceedings of the Irish Machine Vision and Image Processing Conference
Ó Tuairisg, S and Butler, R and Golden, A and Voisin, B and Shearer, A (2003) An automated image processing and analysis pipeline for the astrovirtel virtual observatory prototype Proceedings of the Irish Machine Vision and Image Processing Conference Portrush, Northern Ireland, , 03-SEP-03 - 05-SEP-03 , pp.159-167 [Details]
(2002) Neutron Stars in Supernova Remnants
Golden, Aaron and Butler, Raymond F and Shearer, Andy (2002) Characterizing the Optical Counterpart to PSR B1951+ 32 in CTB 80 . In: Slane, P.O. and Gaensler, B.M, et al eds. Neutron Stars in Supernova Remnants Boston, MA, , 14-AUG-14 - 17-AUG-14 , pp.61-64 [Details]
(2002) Continuing the Challenge of EUV Astronomy: Current Analysis and Prospects for the Future
Golden, Aaron (2002) `For now we see through the ISM, darkly' ...EUVE's view of Neutron Stars . In: Howell, Steve B.; Dupuis, Jean; Golombek, Daniel; Walter, Frederick M.; Cullison, Jennifer eds. Continuing the Challenge of EUV Astronomy: Current Analysis and Prospects for the Future Jenner, CA, , 22-JUL-01 - 24-JUL-01 , pp.4-14 [Details]
(2002) Proceedings of the 270. WE-Heraeus Seminar on Neutron Stars, Pulsars, and Supernova Remnants
Butler, R. F. ; Golden, A. ; Shearer, A. ; Gouiffe, C (2002) PSR B1951+32 and PSR J0537-6910 - where are the optical counterparts? . In: W. Becker, H. Lesch, and J. Trümper eds. Proceedings of the 270. WE-Heraeus Seminar on Neutron Stars, Pulsars, and Supernova Remnants Bad Honnef, Germany, , 21-JAN-02 - 25-JAN-02 , pp.54-57 [Details]
(2002) Astronomical Site Evaluation in the Visible and Radio Range
Gizani, N and Garrington, S and Lawson, D and Shearer, A and Golden, A (2002) MERLIN telescopes: New site RFI surveys and a possible new MERLIN Irish, radio telescope (Poster) . In: Vernin, J.; Benkhaldoun, Z.; Muñoz-Tuñón, C eds. Astronomical Site Evaluation in the Visible and Radio Range Marrakech, Morocco, , 13-NOV-00 - 17-NOV-00 , pp.488-495 [Details]
(2001) Exo-/astro-biology. Proceedings of the First European Workshop
Golden, A;Shearer, A;Browne, J;Butler, R;Penny, A;Nuth, J (2001) A virtual laboratory model for coordinating future astrobiological research . In: P. Ehrenfreund, O. Angerer & B. Battrick eds. Exo-/astro-biology. Proceedings of the First European Workshop Frascati, Italy, , 21-MAY-01 - 23-MAY-01 , pp.341-344 [Details]
(2001) Astronomical Data Analysis Software and Systems X
Butler, RF and Golden, Aaron and Shearer, Andrew (2001) Deconvolution of Drizzled''and Rotated HST/WFPC2 Images: Faint-object Photometry in Crowded Fields . In: Harnden, F. R., Jr.; Primini, Frances A.; Payne, Harry E eds. Astronomical Data Analysis Software and Systems X Boston, MA, , 12-NOV-00 - 15-NOV-00 , pp.431-434 [Details]
(2000) Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177
Golden, A;Shearer, A;Beskin, G (2000) Unpulsed optical emission from the Crab pulsar . In: Michael Kramer, N. Wex, R. Wielebinski eds. Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177 Bonn, Germany, , 30-AUG-99 - 03-SEP-99 , pp.297-298 [Details]
(2000) Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177
Golden, A;Shearer, A;Edelstein, J (2000) PSR B0656+14: Combined optical, X-ray & EUV studies . In: Michael Kramer, Norbert Wex, Richard Wielebinski eds. Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177 Bonn, Germany, , 30-AUG-99 - 03-SEP-99 , pp.299-300 [Details]
(2000) Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177
Shearer, A;Golden, A;Beskin, G (2000) Implications of the optical observations of Isolated Neutron Stars . In: Michael Kramer, Norbert Wex, Richard Wielebinski eds. Pulsar Astronomy - 2000 And Beyond: IAU Colloquium 177 Bonn, Germany, , 30-AUG-99 - 03-SEP-99 , pp.307-310 [Details]
(1997) Alpbach Summer School 'Fundamental Physics in Space', ESA SP-420
Golden, A. & Traeger, S. (1997) GHOST - Galactic Halo Object Space Telescope . In: Wilson, A eds. Alpbach Summer School 'Fundamental Physics in Space', ESA SP-420 Alpbach, Austria, , 22-JUL-97 - 31-JUL-97 , pp.55-86 [Details]

Book Chapters

  Year Publication
(2013) 'Chromatin Signature'
Thomas, Brandon J and Rubio, Eric D and Krumm, Niklas and Ó Broin, Pilib and Bomsztyk, Karol and Welcsh, Piri and Greally, John M and Golden, Aaron A and Krumm, Anton (2013) 'Chromatin Signature' In: Epigenetics, environment, and genes. New Jersey: CRC Press. [Details]

Other Journals

  Year Publication
(2021) 'MAORY: A Multi-conjugate Adaptive Optics RelaY for ELT'
P. Ciliegi, G. Agapito, M. Aliverti, F. Annibali, C. Arcidiacono, A. Balestra, A. Baruffolo, M. Bergomi, A. Bianco, M. Bonaglia, L. Busoni, M. Cantiello, E. Cascone, G. Chauvin, S. Chinellato, V. Cianniello, J. J. Correira, G. Cosentino, M. Dall'Ora, V. De Caprio, N. Devaney, I. Di Antonio, A. Di Cianno, U. Di Giammatteo, V. D'Orazi, G. Di Rico, M. Dolci, S. Doutè, C. Eredia, J. Farinato, S. Esposito, D. Fantinel, P. Feautrier, I. Foppiani, E. Giro, L. Gluck, A. Golden, A. Goncharov et al (2021) 'MAORY: A Multi-conjugate Adaptive Optics RelaY for ELT' ESO Messenger, 182 :13-16. [DOI] [Details]
(2021) 'Histone sequence variation in divergent eukaryotes facilitates diversity in chromatin packaging'
Patwal, Indu and Trinh, Hien and Golden, Aaron and Flaus, Andrew (2021) 'Histone sequence variation in divergent eukaryotes facilitates diversity in chromatin packaging' bioRxiv, . [DOI] [Details]

Conference Contributions

  Year Publication
(2022) Living Planet Symposium, European Space Agency,
Golden A.; Schoenrock, K.; Kreuger-Hadfield, S.; O¿Callaghan T.; Chan, K.; Power A.M. (2022) Monitoring Irish Atlantic Sub-Tidal Kelp Forests Remotely From Orbit. [Poster Presentation (Refereed)], Living Planet Symposium, European Space Agency, Bonn, Germany , 23-MAY-22 - 27-MAY-22. [Details]
(2021) The 20.5th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun,
Dulaimi, Salam; Fitzgerald, Karol; Boyle, Richard P.; Golden, Aaron; Butler, Ray F. (2021) The Light Curve Fitter: A novel application for deconvolving two superimposed sinusoidal waves developed using the Agile Software Development Lifecycle. [Poster Presentation], The 20.5th Cambridge Workshop on Cool Stars, Stellar Systems, and the Sun, Online , 02-MAR-21 - 04-MAR-21. [Details]
(2019) 54th European Marine Biological Symposium,
Schoenrock, K.M., Chan, K., O’Connor, A.M., Krueger-Hadfield, S.A., Golden, A., O’Callaghan, T., O’Callaghan, R., Power, A.M. (2019) The diversity and resilience of kelp ecosystems in Ireland. [Poster Presentation], 54th European Marine Biological Symposium, , Dublin, Ireland , 25-AUG-19 - 29-AUG-19. [Details]
(2015) The 66th Annual Meeting of the American Association for the Study of Liver Diseases,
Sharma, Yogeshwar and Tchaikovskaya, Tatyana and Viswanathan, Preeti and Rogler, Charles and Rhee, David and Broin, Pilib and Quispe, Wilber and Maslov, Alexander and Golden, Aaron and Gupta, Sanjeev (2015) Therapeutic Potential in Toxic Liver Injury of Exosomes Isolated from Healthy or Diseased Donors Depends on their Content with Capacity to Beneficially Regulate Cellular Gene Expression: 515. [Poster Presentation], The 66th Annual Meeting of the American Association for the Study of Liver Diseases, Boston , 13-NOV-15 - 17-NOV-15. [Details]
(2015) The 66th Annual Meeting of the American Association for the Study of Liver Diseases,
Sharma, Yogeshwar and Tchaikovskaya, Tatyana and Viswana-than, Preeti and Rhee, David and Broin, Pilib and Gorbacheva, Tatyana and Maslov, Alexander and Golden, Aaron and Gupta, Sanjeev (2015) Characterization of Exosomal microRNA (miRNA) Content Following Hepatic Injury And Roles in Cytoprotection After Uptake of Exosomes By Injured Hepatocytes. [Poster Presentation], The 66th Annual Meeting of the American Association for the Study of Liver Diseases, Boston , 13-NOV-15 - 17-NOV-15. [Details]
(2019) 7th European Phycological Congress,
Schoenrock, K.M., Chan, K., O’Connor, A.M., Krueger-Hadfield, S.A., Golden, A., O’Callaghan, T., O’Callaghan, R., Power, A.M. (2019) ‘The diversity and resilience of kelp ecosystems in Ireland’. [Poster Presentation], 7th European Phycological Congress, Zagreb, Croatia , 25-AUG-19 - 30-AUG-19. [Details]
(2019) American Academy of Underwater Sciences Diving for Science Symposium,
Schoenrock, K.M., Chan, K., O'Connor, A.M., O'Callaghan, T., O'Callaghan, R., Krueger-Hadfield, S.A., Golden, A., Power, A.M. (2019) 'The diversity and resilience of kelp ecosystems in Ireland'. [Poster Presentation], American Academy of Underwater Sciences Diving for Science Symposium, Simon Fraser University, Vancouver, Canada , 08-OCT-19 - 11-OCT-19. [Details]
(2020) 68th British Phycological Society meeting,
Schoenrock, K.M., Chan, K., O’Connor, A.M., Krueger-Hadfield, S.A., Golden, A., O’Callaghan, T., O’Callaghan, R., Power, A.M. (2020) ‘The diversity and resilience of kelp ecosystems in Ireland’. [Poster Presentation], 68th British Phycological Society meeting, Plymouth, U.K , 06-JAN-20 - 09-JAN-20. [Details]
(2019) Phycological Society of America,
Schoenrock, K.M., Krueger-Hadfield, S.A., Golden, A., Power, A.M. (2019) The diversity and resilience of kelp ecosystems in Ireland. [Poster Presentation], Phycological Society of America, Miami, Florida, USA , 23-JUN-19 - 27-JUN-19. [Details]
(2015) Virtual Institute of Bioinformatics, Éire (VIBE),
Pilib Ó Broin, Noboru Hiroi, Aaron Golden (2015) ChIPSOM: Improved de novo motif discovery using a self- organizing map - a Tbx1 case study. [Oral Presentation], Virtual Institute of Bioinformatics, Éire (VIBE), Dublin , 01-JAN-15 - 01-JAN-15. [Details]
(2012) 4th International Workshop on Science Gateways for Life Sciences (IWSG-Life 2012),
Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, and John M. Greally (2012) The Einstein Science Gateway using WASP: A High Throughput Multi-Layered Life Sciences Portal for XSEDE. [Poster Presentation (Refereed)], 4th International Workshop on Science Gateways for Life Sciences (IWSG-Life 2012), Amsterdam , 01-JAN-12 - 01-JAN-12. [Details]
(2008) Virtual Insititute of Bioinformatics Éire (VIBE 2008),
Pilib Ó Broin, Terry Smith, and Aaron Golden (2008) Generating Familial Binding Profiles by Genetic Algorithm. [Poster Presentation (Refereed)], Virtual Insititute of Bioinformatics Éire (VIBE 2008), Maynooth , 01-JAN-08 - 01-JAN-08. [Details]

Dataset

  Year Publication
(2013) VizieR Online Data Catalog: Radio survey of ultracool dwarfs (Antonova+, 2013).
Antonova, A. ; Hallinan, G. ; Doyle, J. G. ; Yu, S. ; Kuznetsov, A. ; Metodieva, Y. ; Golden, A. ; Cruz, K. L. (2013) VizieR Online Data Catalog: Radio survey of ultracool dwarfs (Antonova+, 2013). Dataset [Details]

Gov. Report or Document

  Year Publication
(2021) Host and intestinal microbiota derived metabolomic blood plasma signature for prior radiation injury.
Golden, Aaron Alain-Jon and Ó Broin, Pilib and Guha, Chandan and Kurland, Irwin (2021) Host and intestinal microbiota derived metabolomic blood plasma signature for prior radiation injury. Alexandria, Virginia: US Patent and Trademark Office Gov. Report or Document [Details]

Magazine Article

  Year Publication
(2020) Kelp forests: the multifaceted seaweed in nearshore marine habitats.
Schoenrock K, and Chan, K and Krueger-Hadfield, S and Golden, A and Power, AM (2020) Kelp forests: the multifaceted seaweed in nearshore marine habitats. Magazine Article [Details]

Professional Associations

  Association Function From / To
American Astronomical Society Member 01-JAN-13 /
European Society for Radiotherapy and Oncology Member 01-FEB-20 /
Irish Astronomical Society (formally Astronomical Science Group of Ireland) Member 01-FEB-96 /
European Astronomical Society Member 01-JAN-19 /
Institute of Physics Member 01-JAN-20 /
Royal Astronomical Society Fellow 01-SEP-08 /
International Astronomical Union Member 26-JUL-03 /

Honours and Awards

  Year Title Awarding Body
2001 Minor planet 11451 formally named 'Aarongolden' International Astronomical Union
1998 Visiting Scholar, Department of Astronomy, UC Berkeley Education Abroad Program (UC/NUIG)
1996 Postgraduate Fellowship (NUI Galway) College of Science, NUI Galway
1994 Postgraduate Fellowship (Israeli Academy of Sciences) Israeli Academy of Sciences

Patents

  Patent Number Title Granted
11092591 Host and intestinal microbiota derived metabolomic blood plasma signature for prior radiation injury 17-AUG-21

Committees

  Committee Function From / To
College of Science & Engineering Research & Innovation Committee Vice-Dean 01-JUN-23 /
School Learning & Teaching Committee Member 01-SEP-18 /
College of Science & Engineering Internationalisation Committee School of Maths representative 01-SEP-18 /
Programme Board, Arts with Data Science Oversight, guidance, expertise in the discipline 15-JUN-18 / 12-NOV-20
School Outreach Committee Member 01-JAN-18 /
School Research Committee Member 01-JAN-17 /
Programme Board, M.Sc. in Biomedical Genomics & M.Sc. in Computational Genomics Faculty member 01-AUG-16 /

Education

  Year Institution Qualification Subject
1999 University College Galway DOCTOR OF PHILOSOPHY Astrophysics
1993 Queens University of Belfast MASTERS OF SCIENCE Computational Science
1991 Trinity College Dublin Bachelor of Arts Experimental Physics

Employment

  Employer Position From / To
University of Galway Associate Professor 01-SEP-22 /
NASA Consultant 07-APR-14 / 31-JUL-15
Yeshiva University Research Associate Professor 01-SEP-13 / 19-JUN-16
Albert Einstein College of Medicine Associate Professor 09-MAY-11 / 19-JUN-16
University of Galway Lecturer 01-AUG-16 / 01-SEP-22
NUI Galway Junior/College Lecturer 01-SEP-99 / 30-APR-11

Languages

  Language
English
French

Consultancy

  Client Description
NASA
Consultant Reviewer for the 2014 Discovery Program

Community Engagement

  Title Type From / To
Outreach Ecobot Webinar `Wetland Fringe: Sea Kelp Forest Monitoring & Remote Sensing¿ (13/10/2021) 13-OCT-21 / 13-OCT-21
Other ‘New Horizons’ Encounter With Pluto – Our Solar System’s Missing Link’ 20-JUL-15 / 20-JUL-15
Outreach '10 Things to Know About - Seaweed' (15/11/2021 20:30 RTÉ One) 15-NOV-21 / 15-NOV-21
Outreach Science to the Rescue ( 10/11/2021, 22:40 RTÉ One) 10-NOV-21 / 10-NOV-21
Outreach Blindboy Podcast 'Science, Art, Climate Change and AI' (05/11/2021) 10-NOV-21 / 10-NOV-21
Outreach Has Earth contaminated the solar system? The case for life on Mars 13-FEB-10 / 13-FEB-10
Outreach ‘Origins, Grids and BOINC - High Performance Computing at NUI Galway’ 26-FEB-03 / 26-FEB-03
Outreach Accelerated Computing Platforms and Scientific Computing 16-APR-08 / 16-APR-08
Outreach ‘Observing in the twilight zone at the sub-stellar boundary - are brown dwarfs stars, pulsars or planets?’ 27-JAN-07 / 27-JAN-07
Outreach Going to Moon to Look for the Cave of Dreams 16-MAR-12 / 16-MAR-12
Advocacy Galileo and the International Year of Astronomy 2009 11-NOV-09 / 11-NOV-09
Other ‘Big data in modern biology’ 22-APR-13 / 22-APR-13
Outreach Touching the Void the strange world of Brown Dwarfs 28-OCT-09 / 28-OCT-09
Outreach ‘Genes, Germs & Greenbacks - the World of Bioinformatics’ 27-NOV-03 / 27-NOV-03
Outreach Going to Moon to Look for the Cave of Dreams 23-APR-09 / 23-APR-09
Outreach ‘Brown dwarfs and exoplanets’ 06-FEB-08 / 06-FEB-08
Outreach ‘Understanding the Kink in the Cosmic Ray Energy Spectrum’ 28-SEP-03 / 28-SEP-03

Reviews

  Journal Role
Genomics Editoral Board
Frontiers in Astronomy & Space Science Editor
Plos One Editoral Board

Other Activities

  Description

2021 Panel Member, European Southern Observatory's Observing Programmes Committee

2021 - Expert Reviewer & Panel Member for the Portuguese Government's Fundação para a Ciência e a Tecnologia (Computer and Information Sciences and Informatics).

2021 - Expert evaluator for the Wellcome-HRB Irish Clinical Academic Training (ICAT) programme.

2019-- Member, Science Working Group for MAORY, the main adaptive optics module for the European Southern Observatory’s Extremely Large Telescope (PI: Emiliano Diolaiti, INAF Osservatorio Astronomico di Bologna, Italy)

2018 Reviewer, Time Allocation Committee, Giant Meterwave Radio Telescope, Tata Institute for Fundamental Research, Pune, India

2018 Expert Reviewer, European Commission Marie Sklodowska-Curie Individual Fellowships (MSCA-IF) 2017 call (Physics Panel)

2017-- Member, POLLUX Science Team, a UV spectropolarimeter proposed for LUVOIR, the follow-on mission to the Hubble Space Telescope (PI: Jean-Claude Bouret, Laboratoire d’Astrophysique de Marseille, France)

2017-- Visiting Astronomer, Armagh Observatory & Planetarium, Armagh, Co. Armagh, U.K.

2016-- Member & NUI Galway representative, Irish Low Frequency Array (I-LOFAR) Consortium

2014--2016 Lead External Reviewer for NASA Maturation of Instruments for Solar SystemExploration (MatISSE), MatISSE12-0027, Alian Wang (PI), The WashingtonUniversity, ‘A Compact Integrated Raman Spectrometer (CIRS)’

2014-- NASA Postdoctoral Fellowship Review Panel

2014-2016 Visiting Scientist, Department of Astrophysics, American Museum of Natural History, New York, U.S.A

2014 Reviewer, Time Allocation Committee, Multi-Element Radio Linked InterferometerNetwork (e-MERLIN) array, Jodrell Bank Observatory, UK

2013 Review Panel, NASA NNH12ZDA001N-MATISSE ROSES 2012: Maturation of Instruments for Solar System Exploration

2013 Review Panel, NASA NESSF13: Earth & Space Science Fellowship

2013 Review Panel, NASA NNH13ZDA001N-OSS ROSES 2013: Origins of Solar Systems

2013 Review Panel, National Sciences & Engineering Research Council of Canada Discovery Frontiers: Advancing Big Data Science in Genomics Research

2013 Review Panel, NASA NNH13ZUA002N: Space Technology Research Opportunities -Early Stage Innovations

Teaching Interests

I'm interested in taking full advantage of the the new paradigm in computational notebooks (such as Jupyter notebooks/labs and the use of RStudio) as a powerful means of teaching students how to fully engage with practically oriented material. The beauty of the notebooks (either in Python (Jupyter) or R (R-studio)) is that are easily adapted to encourage 'play' based learning around the topic at hand. This is exactly how scientific researchers develop their skills and programming abilities, and so offers students precisely the same means to learn techniques and domain expertise. I am also interested in exploring how self-efficacy, in particular research self-efficacy can be enhanced during this learning process.


Recent Postgraduate Students

  Graduation Name Degree Primary Supervisor
2023 Robert Ferguson Msc Y
2017 Kevin R. Shieh PhD Y
2021 Salam Dulaimi PhD
2014 Pilib Ó Broin PhD Y
2012 Leon K. Harding PhD Y
2012 Stephen Bourke PhD Y
2011 Alan Fergus PhD
2009 Gregg Hallinan PhD Y
2008 Caoilfhionn Lane PhD Y
2007 James Mac Donald PhD Y
2008 Paul Geeleher Msc Y
2008 Andrew McLellan Msc Y
2005 Shaun Mahony PhD
2004 Padraig O'Connor PhD

Modules Taught

  Term/Year Module Title Module Code Subject / Desc
Semester 1/2023 Astrophysical Concepts PH222
Semester 2/2022 Physics of Radiotherapy PH5105
Semester 2/2022 Genomics Research Methods MA5117
Semester 2/2022 Introduction to Bioinformatics MA324
Semester 2/2021 Physics of Radiotherapy PH5105
Semester 2/2021 Introduction to Bioinformatics MA324
Semester 2/2021 Genomics Research Methods MA5117
Semester 2/2020 Genomics Research Methods MA5117
Semester 2/2020 Physics of Radiotherapy PH5105
Semester 2/2020 Introduction to Bioinformatics MA324
Semester 2/2019 Physics of Radiotherapy PH5105
Semester 2/2019 Introduction to Bioinformatics MA324
Semester 2/2019 Genomics Research Methods MA5117
Semester 1/2020 Statistical Computing with R MA5108
Semester 1/2020 Programming for Biology MA5114
Semester 1/2019 Programming for Biology MA5114
Semester 1/2019 Statistical Computing in R MA5108
Semester 1/2018 Programming for Biology MA5114
Semester 1/2018 Statistical Computing with R MA5108

External Collaborators

  Name Organisation / Institute Country Description of Collaboration
Dr. Cormac Reynolds Commonwealth Scientific and Industrial Research Organisation AUSTRALIA
Studying stellar coronae and winds at the highest resolutions using VLBI techniques
Professor Paul Hurley Western Sydney University AUSTRALIA
Exploring the development of novel imaging algorithms applicable to both radio astronomy observational data as well as medical imaging,
Dr. Andy Jarvis International Center for Tropical Agriculture COLOMBIA
Co-Investigator on the SFI funded 'TAPAS' project
Professor Aline Vidotto Leiden University NETHERLANDS
Provides invaluable insight into work being conducted by Dr. O'Fionnagain, an IRC Postdoctoral fellow I mentor.
Dr. Valerie McCarthy Dundalk Institute of Technology IRELAND
Co-investigator in the EPA funded 'INFER' project.
Professor Stacy Krueger-Hadfield Department of Biology, University of Alabama at Birmingham U.S.A.
Co-investigator in the EPA funded 'KelpRes' project.